DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rasef

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001072877.1 Gene:rasef / 780339 XenbaseID:XB-GENE-1002559 Length:722 Species:Xenopus tropicalis


Alignment Length:64 Identity:16/64 - (25%)
Similarity:28/64 - (43%) Gaps:25/64 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 ISGMVVCALWCSSCMTALLLVANR----LLG---------MTKPSLAVKLFEGRKTYIALTFPI 155
            ::|:|.|:|        :|.|::|    .||         :::.|.||.    |:|...:..||
 Frog     4 LTGLVFCSL--------VLSVSSRSFFSFLGEAFDAMPERISRDSQAVV----RRTRWPIRLPI 55

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 16/64 (25%)
SOCS 192..234 CDD:470605
rasefNP_001072877.1 FRQ1 <9..70 CDD:444056 14/59 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..109
EnvC 213..>357 CDD:443969
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..384
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 439..491
Rab 523..687 CDD:206640
Blue background indicates that the domain is not in the aligned region.

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