Protein Alignment Rab40 and rab40c

DIOPT Version :9

• Sequence 1: NP_727611.1
• Gene: Rab40 / 32195
• FlyBaseID: FBgn0030391
• Length: 265
• Species: Drosophila melanogaster
• Sequence 2: NP_001035438.1
• Gene: rab40c / 678600
• ZFINID: ZDB-GENE-030515-1
• Length: 279
• Species: Danio rerio
• Alignment Length: 285
• Identity: 165/285 - (57%)
• Similarity: 202/285 - (70%)
• Gaps: 31/285 - (10%)

  Fly     2 GTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFC--SGNDCTSHILQTVAYKTTTILLE 64
            |:..|.||||||.||||||||||.|||.:|:|.|.|||:.  ||.|          ||||||||:
Zfish     5 GSPVKSYDYLLKFLLVGDSDVGKGEILDSLQDGSAESPYAYSSGID----------YKTTTILLD 59

  Fly    65 GKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPGIPKVLV 129
            |:||||:|||||||||||||.||||||||||:|||||||:|||||||||::|:||||||:|::||
Zfish    60 GRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIREIDEHAPGVPRILV 124

  Fly   130 GNRLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKV 194
            ||||||||||||..:||..||.:|.|:.||:|||||||:.|||.||:|:.|.|:|||..||.|:|
Zfish   125 GNRLHLAFKRQVPTEQARAYAEKNGMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKFWRPNRV 189

  Fly   195 LSLQELCCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTTSQCF-------------------NS 240
            .|||:||||.||..|.|:.||.||||.::||.|||:::......                   ||
Zfish   190 FSLQDLCCRAIVSCTPVHLIDKLPLPVAIKSHLKSFSMANGMNAVMMHGRSYSLANAAGGSKGNS 254

  Fly   241 LTQSSKSKNRCKTPTSSSRNSCAIA 265
            |.:|...:.....|.:.:||:|.|:
Zfish   255 LKRSKSIRPPQSPPQNCTRNNCKIS 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rab40	NP_727611.1	P-loop_NTPase	6..265	CDD:304359	163/279 (58%)
		RAB	12..182	CDD:197555	120/171 (70%)
		SOCS	192..234	CDD:295349	24/41 (59%)
rab40c	NP_001035438.1	Rab40	9..279	CDD:133321	163/279 (58%)
		SOCS_Rab40	187..229	CDD:239711	24/41 (59%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	245	1.000	Domainoid score	I2144
eggNOG	1	0.900	-	-		E1_KOG0078
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H10907
Inparanoid	1	1.050	326	1.000	Inparanoid score	I2458
OMA	1	1.010	-	-		QHG46774
OrthoDB	1	1.010	-	-		D1065856at2759
OrthoFinder	1	1.000	-	-		FOG0002583
OrthoInspector	1	1.000	-	-		otm26588
orthoMCL	1	0.900	-	-		OOG6_107740
Panther	1	1.100	-	-	LDO	PTHR47980
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R10300
SonicParanoid	1	1.000	-	-		X1940
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	15	14.870