DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rasef

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:XP_699335.4 Gene:rasef / 570731 ZFINID:ZDB-GENE-081105-157 Length:706 Species:Danio rerio


Alignment Length:176 Identity:61/176 - (34%)
Similarity:90/176 - (51%) Gaps:23/176 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLEGKRVKLQLWDTSG 77
            :::|.||:.|||...|..|    .::.| .||  ||..| .|.::..|::::|....||||||:|
Zfish   509 RIVLAGDAAVGKSSFLLRL----CKNEF-KGN--TSATL-GVDFQMKTLVVDGVPTVLQLWDTAG 565

  Fly    78 QGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEV-DEHAPGIPKVLVGNRLHL------ 135
            |.||.:|.:||.|.|.|::|:||:|.:.||..:..|:..: |.....||.:||||:..|      
Zfish   566 QERFRSIAKSYFRRADGVLLLYDVTCEKSFLNVREWVDIIEDVSQDDIPIMLVGNKTDLRKEALQ 630

  Fly   136 ----AFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177
                ........|.|.||::   :.| |.|.....||.|:...|||
Zfish   631 DGVTCIPTSYGEKLAMTYSA---LFC-ETSAKDGSNIIEAVLHLAR 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 61/176 (35%)
SOCS 192..234 CDD:470605
rasefXP_699335.4 FRQ1 <4..72 CDD:444056
SMC_prok_B <139..>330 CDD:274008
Rab 508..672 CDD:206640 59/174 (34%)
Blue background indicates that the domain is not in the aligned region.

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