DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and Rab9Fb

DIOPT Version :9

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_727472.1 Gene:Rab9Fb / 32029 FlyBaseID:FBgn0052670 Length:214 Species:Drosophila melanogaster


Alignment Length:182 Identity:67/182 - (36%)
Similarity:98/182 - (53%) Gaps:18/182 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPS-TESPFCS-GNDCTSHILQTVAYKTTTILLEGKRVKL 70
            ||||.|:|::||..|||..:|....|.. ||...|: |.|          ::...:.|.|:.|.|
  Fly     4 YDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMD----------FRVRNVELAGRMVML 58

  Fly    71 QLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDE-HAPGIPKVLVGNRLH 134
            |:|||:|..||.:::.||.|||.||:||||||:..||..||.||||:.. .:..:..:||||:..
  Fly    59 QIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNKCD 123

  Fly   135 LAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELA-----RMALH 181
            ....|||..:|...||:...:..:|:|.....|:.:.|..|:     |:.:|
  Fly   124 DLDNRQVRMEQGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIH 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop_NTPase 6..265 CDD:304359 67/182 (37%)
RAB 12..182 CDD:197555 63/178 (35%)
SOCS 192..234 CDD:295349
Rab9FbNP_727472.1 RAB 8..171 CDD:197555 61/172 (35%)
Rab 8..165 CDD:206640 60/166 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR47980
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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