DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and Rab9Db

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster


Alignment Length:177 Identity:62/177 - (35%)
Similarity:85/177 - (48%) Gaps:21/177 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLE------GK 66
            ||...|::::|||.|||..:|....|          |..|.....||........:|      |:
  Fly     4 YDNPFKIIILGDSGVGKTCLLMRFSD----------NQFTERHRVTVGMDRRECSVEFADWRMGR 58

  Fly    67 RVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAPG-IPKVLVG 130
              .||:||||...||..:..:..|.|.||:||||||:..||..||.|:||:....|. :..:|||
  Fly    59 --MLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVG 121

  Fly   131 NRLHLAFKRQVAAKQAETYASRNNMSCF-EISPLCNFNIRESFCELA 176
            |:......|||:..|...||.|.:: || |:|.....|:.:.|..||
  Fly   122 NKSDDPNHRQVSMAQGFNYAHRQSI-CFEEVSAKSGRNVYDIFSSLA 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 62/177 (35%)
SOCS 192..234 CDD:470605
Rab9DbNP_572642.1 Rab 8..167 CDD:206640 58/171 (34%)
Blue background indicates that the domain is not in the aligned region.

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