DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab40 and rab-19

DIOPT Version :10

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_001370091.1 Gene:rab-19 / 178301 WormBaseID:WBGene00004278 Length:210 Species:Caenorhabditis elegans


Alignment Length:171 Identity:68/171 - (39%)
Similarity:97/171 - (56%) Gaps:10/171 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLEGKRVKLQL 72
            :|||.|::||||..|||..::....:    ..|......|.    .|.:...|::::|||||||:
 Worm     7 FDYLFKIVLVGDMGVGKTCVVQRFRN----GTFVDRQGTTI----GVDFTMKTLVVDGKRVKLQI 63

  Fly    73 WDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEH-APGIPKVLVGNRLHLA 136
            |||.||.||.||.:||.|.|.||:|.||||.|.||..:.||:.:|.:. ||.:.|:|:|.:..|.
 Worm    64 WDTGGQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWIDDVSKFAAPNVVKLLIGTKCDLE 128

  Fly   137 FKRQVAAKQAETYASRNNM-SCFEISPLCNFNIRESFCELA 176
            .:|.:.|::||.....|.| :..|.|...|.|:..:|.|||
 Worm   129 DQRAIEAEEAEMLQRANGMFAMLETSAKGNVNVDNAFLELA 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 68/171 (40%)
SOCS 192..234 CDD:470605
rab-19NP_001370091.1 Rab19 8..172 CDD:133267 68/170 (40%)
Blue background indicates that the domain is not in the aligned region.

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