DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab40 and Rab15

DIOPT Version :9

Sequence 1:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster
Sequence 2:NP_598811.3 Gene:Rab15 / 104886 MGIID:1916865 Length:212 Species:Mus musculus


Alignment Length:202 Identity:82/202 - (40%)
Similarity:119/202 - (58%) Gaps:14/202 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQT-VAYKTTTILLEGKR 67
            |.|.||.|.::||:|||.|||..:|....|....|         |||... |.:|..||.::|.:
Mouse     1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHS---------SHISTIGVDFKMKTIEVDGIK 56

  Fly    68 VKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHAP-GIPKVLVGN 131
            |::|:|||:||.|:.||.:.|.|.||||.|||||:::.|:..|.:|:.:|||:|| |:.|:|:||
Mouse    57 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGN 121

  Fly   132 RLHLAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELARMAL--HRNGMEHI-WRSNK 193
            :.....||||..:|.:..|....|..:|.|...|.||:|||..|..:.|  ||..::.: .|::.
Mouse   122 KADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELDGLRTRASN 186

  Fly   194 VLSLQEL 200
            .|:|.||
Mouse   187 ELALAEL 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab40NP_727611.1 P-loop_NTPase 6..265 CDD:304359 81/200 (41%)
RAB 12..182 CDD:197555 70/173 (40%)
SOCS 192..234 CDD:295349 4/9 (44%)
Rab15NP_598811.3 Rab15 9..172 CDD:206698 70/171 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..212 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.