DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkcdelta and Prkch

DIOPT Version :10

Sequence 1:NP_572797.3 Gene:Pkcdelta / 32191 FlyBaseID:FBgn0287828 Length:1894 Species:Drosophila melanogaster
Sequence 2:NP_112347.1 Gene:Prkch / 81749 RGDID:621888 Length:683 Species:Rattus norvegicus


Alignment Length:418 Identity:202/418 - (48%)
Similarity:263/418 - (62%) Gaps:39/418 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly  1481 GSNAGTLSVPSAGSGSGGGASTSSSPSIIRMSTCSNDSGFEG-----GTAPSSPKKMLETSYTYS 1540
            |.||..|:...||.|...| :.|.:..:|..||... .|.||     |...:|            
  Rat   296 GVNAVELAKTLAGMGLQPG-NISPTSKLISRSTLRR-QGKEGSKEGNGIGVNS------------ 346

  Fly  1541 QFQKSGRFTAPATVIPRFKNYSVDDFHFLAVLGKGSFGKVLLAELRDTTYYYAIKCLKKDVVLED 1605
                |.||             .:|:|.|:.||||||||||:||.:::|...||:|.|||||:|:|
  Rat   347 ----SSRF-------------GIDNFEFIRVLGKGSFGKVMLARIKETGELYAVKVLKKDVILQD 394

  Fly  1606 DDVDSTLIERKVLALGTKHPYLCHLFCTFQTESHLFFVMEYLNGGDLMFHIQESGRFSEERARFY 1670
            |||:.|:.|:::|:|...||:|..|||.|||...||||||::||||||||||:|.||.|.|||||
  Rat   395 DDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFY 459

  Fly  1671 GAEIISGLKFLHKKGIIYRDLKLDNVLLDYEGHVRIADFGMCKLQIYLDKTADSFCGTPDYMAPE 1735
            .|||||.|.|||:||||||||||||||||:|||.::|||||||..|....|..:|||||||:|||
  Rat   460 AAEIISALMFLHEKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPE 524

  Fly  1736 IIKGEKYNQNVDWWSFGVLLYEMLIGQSPFSGCDEDELFWSICNEIPWFPVYISAEATGILKGLL 1800
            |::...|...||||:.||||||||.|.:||...:||:||.:|.|:...:|.::..:||||||..:
  Rat   525 ILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFM 589

  Fly  1801 EKDYTKRIGSQYSPAG--DIADHIFFRPIDWGLLEKRQIEPPFKPQVKHPLDTQYFDRVFTRERV 1863
            .|:.|.|:|| .:..|  :|..|.||:.|||..|..||:||||:|::|...|...||..|.:|..
  Rat   590 TKNPTMRLGS-LTQGGEHEILRHPFFKEIDWVQLNHRQLEPPFRPRIKSREDVSNFDPDFIKEEP 653

  Fly  1864 RLTPIDKEILASMDQKQFHGFTYTNPHI 1891
            .|||||:..|..::|.:|..|:|.:|.:
  Rat   654 VLTPIDEGHLPMINQDEFRNFSYVSPEL 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PkcdeltaNP_572797.3 Herpes_BLLF1 <802..1131 CDD:282904
STKc_nPKC_theta_like 1570..1889 CDD:270744 178/320 (56%)
PrkchNP_112347.1 C2_PKC_epsilon 8..140 CDD:175981
C1_nPKC_epsilon-like_rpt1 166..226 CDD:410385
C1_nPKC_epsilon-like_rpt2 244..298 CDD:410388 1/1 (100%)
STKc_nPKC_eta 359..681 CDD:270742 179/322 (56%)
Blue background indicates that the domain is not in the aligned region.

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