DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkcdelta and Prkca

DIOPT Version :9

Sequence 1:NP_572797.3 Gene:Pkcdelta / 32191 FlyBaseID:FBgn0259680 Length:1894 Species:Drosophila melanogaster
Sequence 2:XP_038941139.1 Gene:Prkca / 24680 RGDID:3395 Length:722 Species:Rattus norvegicus


Alignment Length:573 Identity:226/573 - (39%)
Similarity:296/573 - (51%) Gaps:110/573 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1373 DPHKKIKI--DTTNKCYVKEEAPRYPLVATPRPLWKRE---KIVYSDENTDDESGSEEGSGGSLD 1432
            ||:.|:|:  |..|:...|.:..|    :|..|.|...   |:..||:   |...|.|      .
  Rat   193 DPYVKLKLIPDPKNESKQKTKTIR----STLNPQWNESFTFKLKPSDK---DRRLSVE------I 244

  Fly  1433 EDSDDESGGEECSSTSSSASSEDLDAVAMVTKAGSSNATTVLDSSNSSGSNAGTLSVPSAGSGSG 1497
            .|.|..:..:...|.|...|.        :.|..:|....:|:.......|     ||.......
  Rat   245 WDWDRTTRNDFMGSLSFGVSE--------LMKMPASGWYKLLNQEEGEYYN-----VPIPEGDEE 296

  Fly  1498 GGASTSSSPSIIRMSTCSNDSGFEGGTAPSSPKKMLETSYTYSQFQKSGRFTAPATVIPRFKNYS 1562
            |...........::....|..     .:||..:|.                  |:..:.|.|   
  Rat   297 GNVELRQKFEKAKLGPAGNKV-----ISPSEDRKQ------------------PSNNLDRVK--- 335

  Fly  1563 VDDFHFLAVLGKGSFGKVLLAELRDTTYYYAIKCLKKDVVLEDDDVDSTLIERKVLALGTKHPYL 1627
            :.||:||.||||||||||:||:.:.|...||||.||||||::||||:.|::|::||||..|.|:|
  Rat   336 LTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPPFL 400

  Fly  1628 CHLFCTFQTESHLFFVMEYLNGGDLMFHIQESGRFSEERARFYGAEIISGLKFLHKKGIIYRDLK 1692
            ..|...|||...|:|||||:||||||:|||:.|:|.|.:|.||.|||..||.||||:||||||||
  Rat   401 TQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLK 465

  Fly  1693 LDNVLLDYEGHVRIADFGMCKLQIYLDKTADSFCGTPDYMAPEIIKGEKYNQNVDWWSFGVLLYE 1757
            ||||:||.|||::||||||||..:....|..:|||||||:|||||..:.|.::||||::||||||
  Rat   466 LDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYE 530

  Fly  1758 MLIGQSPFSGCDEDELFWSICNEIPWFPVYISAEATGILKGLLEKDYTKRIGSQYSPAG--DIAD 1820
            ||.||.||.|.||||||.||......:|..:|.||..|.|||:.|...||:|.  .|.|  |:.:
  Rat   531 MLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGC--GPEGERDVRE 593

  Fly  1821 HIFFRPIDWGLLEKRQIEPPFKPQVK------------------------HPLD----------- 1850
            |.|||.|||..||.|:|:|||||:|:                        .||.           
  Rat   594 HAFFRRIDWEKLENREIQPPFKPKVQCTAEVRGFTAFSTQLFLILDISNSSPLSVLILQNFCTKM 658

  Fly  1851 --------------TQYFDRVFTRERVRLTPIDKEILASMDQKQFHGFTYTNP 1889
                          .:.||:.|||.:..|||.|:.::|::||..|.||:|.||
  Rat   659 HWLQWASRPSCGKGAENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PkcdeltaNP_572797.3 S_TKc 1566..1824 CDD:214567 153/259 (59%)
STKc_nPKC_theta_like 1570..1889 CDD:270744 184/369 (50%)
PrkcaXP_038941139.1 C1_cPKC_rpt1 35..92 CDD:410383
C1_cPKC_rpt2 102..155 CDD:410386
C2_PKC_alpha_gamma 159..289 CDD:175992 26/121 (21%)
PKc_like 328..718 CDD:419665 192/389 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343121
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D143719at33208
OrthoFinder 1 1.000 - - FOG0000117
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X125
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.850

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