DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir11a and Grid1

DIOPT Version :10

Sequence 1:NP_572795.2 Gene:Ir11a / 32189 FlyBaseID:FBgn0030385 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:438 Identity:92/438 - (21%)
Similarity:173/438 - (39%) Gaps:86/438 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 ASNVSIPAEDLAGIDWDLLQLLAKALKFRIQLYMPQEPSQIFGE--GNVS--GCFRQLADGTVSI 323
            |.|:....:...|...|:|..|||||.|:.::|  |.|...:|.  .|.|  |...:|......:
  Rat   453 AENILGQPKRYKGFSIDVLDALAKALGFKYEIY--QAPDGRYGHQLHNTSWNGMIGELISKRADL 515

  Fly   324 AIGGLSGSDKRRSLFSKSTVYHQSNFVMVVRRDRYLGRLGPLILPFRGKLW----------GVII 378
            ||..::.:.:|.|:...|..|...:..:::::......:..|..||...:|          ||:|
  Rat   516 AISAITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAVWACIAAAIPVVGVLI 580

  Fly   379 VIL--LLAVLSTCWLRSRLGLSHPIEDLLTVIVG-----------NPIPDHRLPGKGFLRYLLAS 430
            .:|  :.||.|....:.|...|..:...:.::.|           |.:.         :|.::.|
  Rat   581 FVLNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQQGGESSVNSVA---------MRIVMGS 636

  Fly   431 WMLLTLVLRCAYQARLFDVLRLSR-HRPLP--KDLSGLIKDNY-TMVANGYHDFYPLELTCRQPL 491
            |.|.||::..:|.|.|...|.:|| ..|:.  :|||..::.:| |:..:..::::..:.|  .||
  Rat   637 WWLFTLIVCSSYTANLAAFLTVSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGT--NPL 699

  Fly   492 DFSARFERVQR------------AAPDERLTTIALISNLAY-WNHKHPNISRL-------TFVRQ 536
            :..:.|..:.|            :.|.|.:.. |...|.|: |:......:.|       |.:..
  Rat   700 EQDSTFAELWRTISKNGGADNCVSNPSEGIRK-AKKGNYAFLWDVAVVEYAALTDDDCSVTVIGN 763

  Fly   537 PIYMYHLVIYFPRRFFLRPAIDRKIKQLLSAGVMAHIERRYMQYENKRKVASNDPVLLRRITKSI 601
            .|......|........|....::|.:|...|.:..:::::..:..:..:.|:...  :...||:
  Rat   764 SISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSA--QTDGKSL 826

  Fly   602 MNGAYRIH---GLVIVLATGMFILELLAGRSNGRLRRWMEW----VHQ 642
                 ::|   |:..:||.|:.:..|:|.     |..|  |    .||
  Rat   827 -----KLHSFAGVFCILAIGLLLACLVAA-----LELW--WNSNRCHQ 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir11aNP_572795.2 None
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436
PBP1_iGluR_delta_1 25..425 CDD:380615
PBP2_iGluR_delta_1 436..806 CDD:270448 77/366 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.

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