DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir11a and grik4

DIOPT Version :9

Sequence 1:NP_572795.2 Gene:Ir11a / 32189 FlyBaseID:FBgn0030385 Length:642 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:709 Identity:138/709 - (19%)
Similarity:239/709 - (33%) Gaps:231/709 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VVVRAQPTGRDVLLSRLGNQQNELNTRRLANASSYLTRNYIAN-------RINTLVVREICVECP 80
            ::|.|..|...|:|.|         ...|...|.|.|  ||..       |::.|..:.:.: ..
Zfish   215 IIVDANATMSHVILER---------ASELGMLSVYYT--YILTSLEFSLLRLDDLADQRVNI-VG 267

  Fly    81 YELSERQRQLVDQILASLAPELSVLLHKGTAEETTWEYTLFVVNDHTAFTGQVFIFPDELLEREF 145
            :.:..|........:.||              ..:|:...    ||..|.|.. :....|.:...
Zfish   268 FSVFNRTHPFFQDFVLSL--------------NRSWQENC----DHAPFAGTP-LSSALLFDAVH 313

  Fly   146 FCIVVVSEIQSRQFVRQTVGSIVKSNLQMH---FVNVVVVAQLE----------DGTVGTYSYKL 197
            ..:..|.|:...|.|..|..|...|.:..|   .:|.:.:.:||          .|....|:.::
Zfish   314 TVVAAVQELNRSQNVGATQLSCKSSKIWEHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALRI 378

  Fly   198 FKANCTPGITVRQINHFDRITG-KPQQSMPDLYPVRNGHLGDCPFN----VGAAHMPPHLIYKRH 257
            .: |...|:  |||..:....| ..::.:|.|      ::.|..||    :......|:::.:  
Zfish   379 MQ-NSRDGL--RQIGQWHSEQGLSMERKLPSL------NVTDTLFNTTLTITTILENPYVMLR-- 432

  Fly   258 KDPPPASNVSIPAED-LAGIDWDLLQLLAKALKFRIQLYMPQEPSQIFG----EGNVSGCFRQLA 317
                 |::..:...| ..|...|:|:.||..|||:.::.:..:  .::|    .|..:|...:|.
Zfish   433 -----ANHQELEGNDRYEGFCVDMLKELADILKFKYRIRLVGD--GVYGVPGANGTWTGMVGELI 490

  Fly   318 DGTVSIAIGGLSGSDKRRSL--FSK-------STVYHQSNFVMVVRRDRYLGRLGPLILPFRGKL 373
            .....:|:..|:.:.:|..:  |||       |.:|.    |.:.||..|...|.    ||...:
Zfish   491 SRKADLAVAALTITAEREKVIDFSKPFMTLGISIMYR----VHIGRRPGYFSFLD----PFSPGV 547

  Fly   374 WGVIIVILLLAVLSTCWLRSRLG-----LSHP-IEDLLTVIV-----GNPIPDHRLPGKGFL--- 424
            | :.:::..|||....:|.:||.     ..|| ::...::::     ||   ....|..||:   
Zfish   548 W-LFMLLAYLAVSCVLFLVARLTPYEWYNPHPCLKGRCSLLINQYSLGN---SFWFPVGGFMQQG 608

  Fly   425 ----------RYLLASWMLLTLVLRCAYQARLFDVLRLSRHR-PLPK--DLSGLIKDNY-TMVAN 475
                      |.:...|...||::..:|.|.|...|.:.|.. |:..  ||:......| ||...
Zfish   609 STIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTMHGG 673

  Fly   476 GYHDFYPLELTCRQPLDFSARFERVQRAAPDERLTTIALISNLAYWN---HKHPNISRLTFVRQP 537
            ....|:.           ::|::..||                 .||   .|.|::    ||:  
Zfish   674 STMTFFQ-----------NSRYQTYQR-----------------MWNFMYSKQPSV----FVK-- 704

  Fly   538 IYMYHLVIYFPRRFFLRPAIDRKIKQLLSAGVMAHIERRYMQYENKRKVASNDPVLLRRITKSIM 602
                              :.:..|.::|:                     ||...||    :|.|
Zfish   705 ------------------STEEGIARVLN---------------------SNYAYLL----ESTM 726

  Fly   603 NGAYR--------IHGLVIVLATGM-----------FILELLAGRSNGRL----RRWME 638
            |..||        |.||:.....|:           |.|.:|..:...||    |:|.:
Zfish   727 NEYYRQRNCNLTQIGGLLDTKGYGIGMPLGSVYRDEFDLAILRLQEENRLEILKRKWWD 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir11aNP_572795.2 Periplasmic_Binding_Protein_Type_2 306..>356 CDD:304360 13/58 (22%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 42/218 (19%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 91/457 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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