DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir11a and glr-5

DIOPT Version :9

Sequence 1:NP_572795.2 Gene:Ir11a / 32189 FlyBaseID:FBgn0030385 Length:642 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:736 Identity:145/736 - (19%)
Similarity:249/736 - (33%) Gaps:178/736 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RLGNQQNELNTRRLANASSYLTRNYIANRINTL-VVREICVEC----PYELSERQRQLVDQ---- 93
            |:...:..|.:...|:...||.:.:..:.:... .|:|: .||    ..:.||..|.|||.    
 Worm   162 RIRRLEQLLESEEYASIRFYLIKVHDGDYMKAARQVKEL-EECRLLHKKDCSEFSRLLVDMNPEH 225

  Fly    94 ----ILASLAPELSVLLH---KGTAEETTWEYTLFVVNDHTAFTGQVFIFPDELLE-REFFCIVV 150
                :||||...|..|.|   ....|.:|.:..||..| |..|.....:....|.| |:.|....
 Worm   226 TYTFLLASLQMGLIELKHWFLLTNMELSTMDMELFRYN-HARFISPYPVDSTFLTENRDAFNFSH 289

  Fly   151 VSEIQSRQFVRQTVGSIVKSNLQM-----------HFVNVV----VVAQLED--------GTVGT 192
            ..|..:.::..:|..|   .||:|           .|.||.    ...|:.|        .:..:
 Worm   290 FKEHITEKWAMKTDNS---RNLKMMEAVFTFDAVYAFANVFNELSSHMQMNDVPQTLCRKSSRNS 351

  Fly   193 YSYKLFKANCTPGITVRQINHFD---------RITGKPQQS--------------MPDL---YPV 231
            ..|:..::      .:..|.|.|         |:.|.|.:|              :.|:   .|.
 Worm   352 RKYQHGRS------LIDNIVHNDLHGLSGDLRRLNGHPLKSNFSMRIQLLGYSGRLDDIGFWEPA 410

  Fly   232 RNGHL---GDCP----------------FNVGAAHMPPHLIYKRHKDPPPASNVSIPAEDLAGID 277
            .|.|:   ||..                |.|......|:::.|::.....|::      ...|..
 Worm   411 TNVHVNMSGDSKAQLQRNVQVSDELKPHFRVTTIMERPYVMLKKNHYELDANS------KFEGFC 469

  Fly   278 WDLLQLLAKALKFRIQLYMPQE---PSQIFGEGNVSGCFRQLADGTVSIAIGGLSGSDKRRSL-- 337
            .|||..|:|.|.|...::..::   .:..:|.|:..|...::..|...:|:..|:.:.:|...  
 Worm   470 IDLLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGEAEMAVAPLTVNYRRSEAVD 534

  Fly   338 FSKSTVYHQSNFVMVVRRDRYLGRLGPLILPFRGKLWGVIIVILLLAVLSTCWLRS------RLG 396
            |:|..:....:.:..|..|:. ..|...:.|...::|..|...::...|...::.:      .|.
 Worm   535 FTKPFLSLGISILYKVPDDQQ-PDLFSFLNPLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLN 598

  Fly   397 LS-------HPIEDLLT-----VIVGNPIPDHRL----------------PGKGFLRYLLASWML 433
            .|       ||.....|     :::.|.......                |.....|.|..:|.:
 Worm   599 FSCCTAHEPHPAAAFATNQEAPIVMSNNYSFWNTVWYVLSTMLKGGCDFGPRAVSTRLLGGTWWV 663

  Fly   434 LTLVLRCAYQARLFDVLRLSR-HRPLPKDLSGLIKDNYTMVANGYHDFYPLELTCR--------Q 489
            ..||:..||.|.|..||.:|| :.|: |:|..|.  |.|.::.|         |.|        |
 Worm   664 FYLVIISAYTANLAAVLTVSRPYIPI-KNLDDLA--NQTTISYG---------TIRGGSTMQFFQ 716

  Fly   490 PLDFSARFERVQRAAPDERLTTI-------ALISNLAY------WNHKHPNISRLTFVRQPIYMY 541
            ....:|..:..|.....:...|.       ||..|.||      ..::......||.:...:...
 Worm   717 ESRIAAHVKMWQYMKDKDVFVTSNGKGVERALSMNYAYLMESTSLEYETQQNCNLTQIGGVLGSK 781

  Fly   542 HLVIYFPRRFFLRPAIDRKIKQLLSAGVMAHIERRYMQYENKRKVASNDPVLLRRITKSIMN--G 604
            ...|...::......|.|:|......|::...:.::.:.:.....::...|...|...|:.|  |
 Worm   782 GYGIALAKKSEWTDRISRQILLYAKRGIIEMKKTKWWRSKGAACASTASAVKHDRFALSMYNVAG 846

  Fly   605 AYRIHGLVIVLATGMFILELL 625
            .:...|:.||||..:.|.||:
 Worm   847 LFITLGVGIVLAAIVVIFELI 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir11aNP_572795.2 Periplasmic_Binding_Protein_Type_2 306..>356 CDD:304360 9/51 (18%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 56/266 (21%)
ANF_receptor 38..377 CDD:279440 48/225 (21%)
PBP2_iGluR_Kainate 438..819 CDD:270432 74/399 (19%)
Lig_chan 568..855 CDD:278489 54/298 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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