DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11356 and Trim23

DIOPT Version :10

Sequence 1:NP_572786.3 Gene:CG11356 / 32178 FlyBaseID:FBgn0030375 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_001348467.1 Gene:Trim23 / 81003 MGIID:1933161 Length:574 Species:Mus musculus


Alignment Length:182 Identity:47/182 - (25%)
Similarity:82/182 - (45%) Gaps:25/182 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PAMEEFQVLILGPSGSGKTELGHRLSRVSRDRDDQE-ATNGVRCYRMKSAEEPIAQLQLTEVGGN 89
            |.| |.:|:.||..|:|||.:   |.::.:|...|. .|.|   :.:::.|....:..:.:|||.
Mouse   401 PKM-EIRVVTLGLDGAGKTTI---LFKLKQDEFMQPIPTIG---FNVETVEYKNLKFTIWDVGGK 458

  Fly    90 VEMQRLWKHYYASSHALIYCFDLGADPMVMQGTFSLLTDCLVGTQLAGKPVLLVASRHRVGVQLY 154
            .:::.||||||.::.|:::..|......:.: ..|.|...|...:|....:|:.|::.       
Mouse   459 HKLRPLWKHYYLNTQAVVFVVDSSHRDRISE-AHSELAKLLTEKELRDALLLIFANKQ------- 515

  Fly   155 DVEYAFGLEELAKSCDCPLLICHMD---------ETEDLHRGIRWLCHQLMA 197
            ||..|..:||:.:......|.|...         ....|:.|:.||..||:|
Mouse   516 DVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11356NP_572786.3 P-loop containing Nucleoside Triphosphate Hydrolases 32..194 CDD:476819 41/171 (24%)
Trim23NP_001348467.1 mRING-HC-C3HC3D_TRIM23_C-IX 28..77 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 123..172 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 174..223 CDD:380832
CC_brat-like 226..370 CDD:475168
ARF-like 390..574 47/182 (26%)
ARD1 406..574 CDD:206723 44/176 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.