DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11356 and Trim23

DIOPT Version :10

Sequence 1:NP_572786.3 Gene:CG11356 / 32178 FlyBaseID:FBgn0030375 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_008758905.1 Gene:Trim23 / 81002 RGDID:621587 Length:601 Species:Rattus norvegicus


Alignment Length:182 Identity:47/182 - (25%)
Similarity:82/182 - (45%) Gaps:25/182 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PAMEEFQVLILGPSGSGKTELGHRLSRVSRDRDDQE-ATNGVRCYRMKSAEEPIAQLQLTEVGGN 89
            |.| |.:|:.||..|:|||.:   |.::.:|...|. .|.|   :.:::.|....:..:.:|||.
  Rat   428 PKM-EIRVVTLGLDGAGKTTI---LFKLKQDEFMQPIPTIG---FNVETVEYKNLKFTIWDVGGK 485

  Fly    90 VEMQRLWKHYYASSHALIYCFDLGADPMVMQGTFSLLTDCLVGTQLAGKPVLLVASRHRVGVQLY 154
            .:::.||||||.::.|:::..|......:.: ..|.|...|...:|....:|:.|::.       
  Rat   486 HKLRPLWKHYYLNTQAVVFVVDSSHRDRISE-AHSELAKLLTEKELRDALLLIFANKQ------- 542

  Fly   155 DVEYAFGLEELAKSCDCPLLICHMD---------ETEDLHRGIRWLCHQLMA 197
            ||..|..:||:.:......|.|...         ....|:.|:.||..||:|
  Rat   543 DVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11356NP_572786.3 P-loop containing Nucleoside Triphosphate Hydrolases 32..194 CDD:476819 41/171 (24%)
Trim23XP_008758905.1 mRING-HC-C3HC3D_TRIM23_C-IX 55..104 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 150..199 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 201..250 CDD:380832
BBC 253..397 CDD:128778
ARD1 433..601 CDD:206723 44/176 (25%)
Blue background indicates that the domain is not in the aligned region.

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