DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11356 and trim23

DIOPT Version :10

Sequence 1:NP_572786.3 Gene:CG11356 / 32178 FlyBaseID:FBgn0030375 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_005155659.1 Gene:trim23 / 767706 ZFINID:ZDB-GENE-060929-804 Length:576 Species:Danio rerio


Alignment Length:182 Identity:50/182 - (27%)
Similarity:87/182 - (47%) Gaps:25/182 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PAMEEFQVLILGPSGSGKTELGHRLSRVSRDRDDQE-ATNGVRCYRMKSAEEPIAQLQLTEVGGN 89
            |.| |.:|:.||..|:|||.:   |.::.:|...|. .|.|   :.:::.|....:..:.:|||.
Zfish   403 PKM-EIRVVTLGLDGAGKTTI---LFKLKQDEFMQPIPTIG---FNVETVEYKNLKFTIWDVGGK 460

  Fly    90 VEMQRLWKHYYASSHALIYCFDLGADPMVMQGTFSLLTDCLVGTQLAGKPVLLVASRHRVGVQLY 154
            .:::.||||||.::.|:::..|......:|: :.|.|...|...:|....:|:.|::.       
Zfish   461 HKLRPLWKHYYLNTQAVVFVIDSCHRDRLME-SHSELAKLLTEKELRDALLLIFANKQ------- 517

  Fly   155 DVEYAFGLEELAKSCDCPLLIC----HMDETE-----DLHRGIRWLCHQLMA 197
            ||..|..:||:.:......|.|    |:...:     .||.|:.||..||:|
Zfish   518 DVPGAVSVEEMTELLSLHKLCCGRSWHIQGCDARSGMGLHEGLDWLSRQLVA 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11356NP_572786.3 P-loop containing Nucleoside Triphosphate Hydrolases 32..194 CDD:476819 44/171 (26%)
trim23XP_005155659.1 mRING-HC-C3HC3D_TRIM23_C-IX 30..79 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 125..174 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 176..225 CDD:380832
CC_brat-like 228..372 CDD:475168
ARD1 408..576 CDD:206723 47/176 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.