DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp7 and Usp28

DIOPT Version :9

Sequence 1:NP_572779.2 Gene:Usp7 / 32169 FlyBaseID:FBgn0030366 Length:1129 Species:Drosophila melanogaster
Sequence 2:XP_006243068.1 Gene:Usp28 / 315639 RGDID:1311555 Length:1143 Species:Rattus norvegicus


Alignment Length:599 Identity:117/599 - (19%)
Similarity:170/599 - (28%) Gaps:272/599 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 VGLKNQGATCYMNSLLQTLYFTNSLRLSV--YRIPTEADDSSKS--------VGLSLQRVFHELQ 295
            |||||.|.||:.::::|:|:.....|..|  |.:|....::.:|        ....||.:|..|.
  Rat   162 VGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSYSLPQNILENCRSHTEKRNIMFMQELQYLFALLL 226

  Fly   296 FGDR----PVGTKKLTKSFGWETLDSFMQHDVQEFLRVLLDKLESKMK----------------- 339
            ..:|    |.....|.|  |........|.||.||...|||.||...:                 
  Rat   227 GSNRKFVDPSAALDLLK--GAFRSSEEQQQDVSEFTHKLLDWLEDAFQLAVNVNSNPRTKSENPM 289

  Fly   340 -----GTILEGTIPGLFEGKMSSYIKCKNVDYNSTRYETF--YDIQLNIKDKKNIYESFQDYVAP 397
                 ||.|   ..|:.|||..    |.|        |||  |.:|:      |.|.:..:.:..
  Rat   290 VQLFYGTFL---TEGVREGKPF----CNN--------ETFGQYPLQV------NGYHNLDECLEG 333

  Fly   398 ETLEGDNKY---DAGVHGLQEASKGVIFTSFPPVLHLHLMRFQYDPVTDSSIKYNDRFEFYEHIN 459
            ..:|||...   |..|...||.    .||..||||...|.||:::.......|.:::.||.:.|.
  Rat   334 AMVEGDIALLPSDRSVKYGQER----WFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQVIY 394

  Fly   460 LDRYLAESE-------------------------------------------------------- 468
            :|||:.:|:                                                        
  Rat   395 MDRYMYKSKELIRSKRESIRKLKEEIQVLQQKLERYVKYGSGPSRFPLPDMLKYVIEFASTKPAS 459

  Fly   469 ----------------------------------------------------------------- 468
                                                                             
  Rat   460 ESCLSGSVEHMTLPLPSVHCPISDLTAKESSSPKSCSQNAEGSFSSPEDALPNSEVMNGPFTSPH 524

  Fly   469 ------------NTLAD------------------------------------------------ 473
                        .|:.|                                                
  Rat   525 SSLEMPAPPPAPRTVTDEEMNFVKTCLQRWRSEIEQDIQDLKNCISSTTQAIEQMYCDPLLRQVP 589

  Fly   474 YVLHAVLVHSGDNHGGHYVVFINPKADGRWFKFDDDVVSSCRKQEAIEQNYGGMDDEISFHAKCS 538
            |.|||||||.|....|||..:|..:....|.|::|..|:....:|....:|||:        :..
  Rat   590 YRLHAVLVHEGQASAGHYWAYIYNQPRQIWLKYNDISVTESSWEELERDSYGGL--------RNV 646

  Fly   539 NAYMLVYIRQSELDRVLGDITESEISSDL---VERLDLEKRIEMARRKERGEANTYVSVHVILEE 600
            :||.|:|| ..:|.....:....|  ||.   ||.|.:|.|..:.....|.|...         |
  Rat   647 SAYCLMYI-NDKLPHCSAEAAHGE--SDQTAEVEALSVELRQYIQEDNWRFEQEV---------E 699

  Fly   601 NFEEQHKRRLFDLE 614
            .:||:...::..:|
  Rat   700 EWEEEQSCKIPQME 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp7NP_572779.2 MATH_HAUSP 100..229 CDD:239741
COG5077 101..1119 CDD:227409 117/599 (20%)
peptidase_C19C 239..549 CDD:239124 102/529 (19%)
USP7_ICP0_bdg 647..886 CDD:289221
USP7_C2 897..1113 CDD:291217
Usp28XP_006243068.1 UBA_UBP28 23..64 CDD:270540
UCH 161..>399 CDD:278850 72/263 (27%)
Peptidase_C19I 163..654 CDD:239130 99/525 (19%)
Peptidase_C19 163..>271 CDD:271592 33/109 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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