DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tango4 and pafah1b1

DIOPT Version :9

Sequence 1:NP_572778.1 Gene:Tango4 / 32168 FlyBaseID:FBgn0030365 Length:482 Species:Drosophila melanogaster
Sequence 2:NP_991399.1 Gene:pafah1b1 / 403097 XenbaseID:XB-GENE-1002843 Length:410 Species:Xenopus tropicalis


Alignment Length:415 Identity:103/415 - (24%)
Similarity:174/415 - (41%) Gaps:57/415 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 AITDGSATDAASGAGSLVKYNAGARPAE----KTAPLVTGTHTSLVR---------ASLANSNAD 132
            ||.|...::....|.|:.|..|.....|    |.|.|:....||::|         :.|..:..:
 Frog    14 AIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEE 78

  Fly   133 MSANGAIASHLQLIPKKAPS--IPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRV 195
            .::.|.|..      |:.|.  ||:|    |.|.:  :|||...|..:...|......|.:.|..
 Frog    79 FTSGGPIGQ------KRDPKEWIPRP----PEKYA--LSGHRSPVTRVIFHPVFSVMVTASEDAT 131

  Fly   196 IKIWDLASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVIRHYHGHLSAVY 260
            ||:||..:|..:.:|.||..:|:.::.......|.||..|..:|.||.:..:.||..|||...|.
 Frog   132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196

  Fly   261 SLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNTVASVVAQATNPQIITGSHDSTVRLW 325
            |:|:.|..|.:.::.||.|.::|:::|...|.|.|||...|..|........|.:.|:|.|||:|
 Frog   197 SVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261

  Fly   326 DLAAGKSVCTLTNHKKSVRSIVL---------------------HPSLYMFASASPDNIKQWRCP 369
            .:|..:....|..|:..|..|..                     .|..::.:.:....||.|...
 Frog   262 VVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDIS 326

  Fly   370 EGKFVQNISGHTSIVNCMAANSEG-VLVSGGDNGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGI 433
            .|..:..:.||.:.|..:..:..| .::|..|:.|:..||::.....:...|        .|..:
 Frog   327 IGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------HEHFV 383

  Fly   434 FAMCFDQSGSRLITAEADKTIKVYK 458
            .::.|.::...::|...|:|:||::
 Frog   384 TSLDFHKTAPYVVTGSVDQTVKVWE 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tango4NP_572778.1 WD40 <161..458 CDD:225201 81/318 (25%)
WD40 164..458 CDD:238121 79/315 (25%)
WD40 repeat 177..212 CDD:293791 9/34 (26%)
WD40 repeat 218..254 CDD:293791 9/35 (26%)
WD40 repeat 259..295 CDD:293791 12/35 (34%)
WD40 repeat 302..337 CDD:293791 9/34 (26%)
WD40 repeat 343..378 CDD:293791 7/55 (13%)
WD40 repeat 386..426 CDD:293791 7/40 (18%)
WD40 repeat 433..457 CDD:293791 5/23 (22%)
pafah1b1NP_991399.1 LisH 10..34 CDD:369916 6/19 (32%)
WD40 104..408 CDD:238121 79/311 (25%)
WD 1 106..147 11/40 (28%)
WD40 repeat 111..148 CDD:293791 10/36 (28%)
WD 2 148..187 11/38 (29%)
WD40 repeat 154..190 CDD:293791 9/35 (26%)
WD 3 190..229 13/38 (34%)
WD40 repeat 195..231 CDD:293791 12/35 (34%)
WD 4 232..271 12/38 (32%)
WD40 repeat 238..273 CDD:293791 9/34 (26%)
WD 5 274..333 8/58 (14%)
WD40 repeat 279..335 CDD:293791 7/55 (13%)
WD 6 336..377 9/40 (23%)
WD40 repeat 341..377 CDD:293791 7/35 (20%)
WD 7 379..410 7/30 (23%)
WD40 repeat 383..407 CDD:293791 5/23 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53955
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.