DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tango4 and SPCC18.13

DIOPT Version :9

Sequence 1:NP_572778.1 Gene:Tango4 / 32168 FlyBaseID:FBgn0030365 Length:482 Species:Drosophila melanogaster
Sequence 2:NP_588392.1 Gene:SPCC18.13 / 2539246 PomBaseID:SPCC18.13 Length:421 Species:Schizosaccharomyces pombe


Alignment Length:257 Identity:54/257 - (21%)
Similarity:84/257 - (32%) Gaps:70/257 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 STKH--------PYL--FSC--GEDRQVKCWDLEYNKVIRHYHGHLSAVYSLALHPTIDVLATSG 275
            ::||        |||  |||  ||.....|:....|:..|....:..|:..:|.......:||..
pombe    17 NSKHNYIVCCSGPYLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKDYSRMATVS 81

  Fly   276 RDSTARIWDMRTKANVHTL--------------TGHTNTV-----------------ASVVAQAT 309
            .|...|:||......:..|              .|....|                 .|.|.:..
pombe    82 EDKCLRLWDSTQPDKIELLYQKNIPKRCADLCFAGSNEIVFGDKFGDVYCVDENWFTTSEVTEEK 146

  Fly   310 NPQIITGSH---------DSTVRLWDLAAGKSVCTLT------NHKKSVRSIVLHPSLYMFASAS 359
            ...::.|..         ||.::..:...| .|..||      |.:.|...|::       .|..
pombe   147 KSNVVEGKQEPVNNDTLKDSKLQKLEPIMG-HVSILTQLIVAQNPQNSKEEIII-------TSDK 203

  Fly   360 PDNIKQWRCPEGKFVQNIS-GHTSIVNCMAANSEGVLVSGGDNGTMFFWDWRTGYNFQRFQA 420
            .::|:..|.|....::... ||...|:.|:......|:|||.:..:|.||..   ||:...|
pombe   204 DEHIRISRFPNAFVIEGFCLGHEDFVSRMSLYDNRTLISGGGDNHVFVWDLE---NFKCLDA 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tango4NP_572778.1 WD40 <161..458 CDD:225201 54/257 (21%)
WD40 164..458 CDD:238121 54/257 (21%)
WD40 repeat 177..212 CDD:293791
WD40 repeat 218..254 CDD:293791 13/42 (31%)
WD40 repeat 259..295 CDD:293791 8/49 (16%)
WD40 repeat 302..337 CDD:293791 7/43 (16%)
WD40 repeat 343..378 CDD:293791 5/34 (15%)
WD40 repeat 386..426 CDD:293791 11/35 (31%)
WD40 repeat 433..457 CDD:293791
SPCC18.13NP_588392.1 WD40 <20..90 CDD:295369 18/69 (26%)
WD40 <63..>267 CDD:225201 41/211 (19%)
WD40 65..>260 CDD:295369 39/205 (19%)
WD40 repeat 66..104 CDD:293791 8/37 (22%)
WD40 repeat 109..144 CDD:293791 4/34 (12%)
WD40 repeat 152..222 CDD:293791 14/77 (18%)
WD40 repeat 229..264 CDD:293791 12/37 (32%)
WD40 repeat 272..323 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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