DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tango4 and cash-1

DIOPT Version :9

Sequence 1:NP_572778.1 Gene:Tango4 / 32168 FlyBaseID:FBgn0030365 Length:482 Species:Drosophila melanogaster
Sequence 2:NP_001360512.1 Gene:cash-1 / 179445 WormBaseID:WBGene00010631 Length:681 Species:Caenorhabditis elegans


Alignment Length:543 Identity:116/543 - (21%)
Similarity:195/543 - (35%) Gaps:160/543 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 RSIKAKDGYGLVLDKVAKIGEARKASGAQTPGDKTLAITDGSATDAASGAGSLVKYNAGARPAEK 109
            ||.:.|:..||:  ..|.:..:.:.:|.:...|...:.:|....|||        .:|.|..|.:
 Worm   164 RSFRVKNLLGLL--PQADLPSSERLNGRKEKSDSNYSDSDDGHDDAA--------LDADASKAFE 218

  Fly   110 TAPLVTGTHTSLVRASLANSNADMSANGAIASHLQLIPKKAPSIPKPK-------WHAPWKLSRV 167
            ....:..     :.|....|:.|.:..|  ||..:|| |:....||.|       ..:..|.|..
 Worm   219 EFDFLNN-----MDAKEKGSDDDWAGKG--ASFEKLI-KQYKDDPKVKRRSRTSTEESEEKTSND 275

  Fly   168 ISGHLGWVRCIAVEPG---------------------NEWFATGAGDRVIKIWDLASG------- 204
            :..:|.    ..|.||                     :..|..|.|:.:    |:|.|       
 Worm   276 VQKNLE----TDVPPGIRSAIDAAAQEELPVRRQGRRSANFGYGNGNEL----DVALGMQDNDNM 332

  Fly   205 --------------------KLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVI 249
                                .:|::|..|:.::|.:......|.||:..||..:|.|:|:..|..
 Worm   333 DIKDEFKDEDDDPNAQQVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKLWNLDQKKDE 397

  Fly   250 RH------------YHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRT-----------KANV 291
            :|            :.||...|..|.|.||.|.|.|.|.|.....:::.:           :...
 Worm   398 KHNSGGTELEPVYTFRGHKGPVLCLVLSPTGDHLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLT 462

  Fly   292 HTLTGHTNTVASVVAQATNPQIITGSHDSTVRLWD----------LAAGKS---------VCTLT 337
            .||||||:.:.||...::|.::::.|.|||||||:          :.|.||         |.|.|
 Worm   463 ETLTGHTDAIWSVAYHSSNSRLVSASSDSTVRLWEPGNGEPLIRTIGAPKSGILPTSVDFVSTET 527

  Fly   338 NH-------------------------------KKSVRSIVLHPSLYMFASASPD-NIKQWRCPE 370
            :|                               ..::..||.||::.:......| .|:.:....
 Worm   528 SHLLAAYTNCYAQIIDIDTGSTVMVFDFGAVTGSPTMNKIVSHPTMPLTLIGGEDRTIRYFDNTN 592

  Fly   371 GKFVQNISGHTSIVNCMAANSEGV-LVSGGDNGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIF 434
            |..:.....|...|:.:|.:..|: |:||..:|::..|:.......|...|    ....:::.:.
 Worm   593 GSIIHEAIAHVEGVSSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEISA----HRKKNDSAVT 653

  Fly   435 AMCFDQSGSRLITAEADKTIKVY 457
            ::.|..|.|.:.:|.||...|||
 Worm   654 SVAFHPSRSLIGSAGADSLAKVY 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tango4NP_572778.1 WD40 <161..458 CDD:225201 89/420 (21%)
WD40 164..458 CDD:238121 88/417 (21%)
WD40 repeat 177..212 CDD:293791 11/82 (13%)
WD40 repeat 218..254 CDD:293791 11/47 (23%)
WD40 repeat 259..295 CDD:293791 11/46 (24%)
WD40 repeat 302..337 CDD:293791 16/53 (30%)
WD40 repeat 343..378 CDD:293791 7/35 (20%)
WD40 repeat 386..426 CDD:293791 9/40 (23%)
WD40 repeat 433..457 CDD:293791 7/23 (30%)
cash-1NP_001360512.1 Striatin 25..156 CDD:369771
WD40 357..676 CDD:238121 74/322 (23%)
WD40 repeat 367..414 CDD:293791 10/46 (22%)
WD40 repeat 420..467 CDD:293791 11/46 (24%)
WD40 repeat 472..508 CDD:293791 11/35 (31%)
WD40 repeat 518..554 CDD:293791 4/35 (11%)
WD40 repeat 567..600 CDD:293791 7/32 (22%)
WD40 repeat 606..645 CDD:293791 10/42 (24%)
WD40 repeat 652..676 CDD:293791 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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