DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chrac-16 and NF-YC12

DIOPT Version :10

Sequence 1:NP_572776.1 Gene:Chrac-16 / 32166 FlyBaseID:FBgn0043001 Length:140 Species:Drosophila melanogaster
Sequence 2:NP_198630.2 Gene:NF-YC12 / 833794 AraportID:AT5G38140 Length:195 Species:Arabidopsis thaliana


Alignment Length:124 Identity:35/124 - (28%)
Similarity:59/124 - (47%) Gaps:11/124 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAA--YTEEFGQRPGEALKYEHL 79
            :|.|||||||.|:||..:...|:.:|..|.:|..|.|:..:...|  :|:...:   |.::...:
plant    65 QTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTR---ETIRRCDI 126

  Fly    80 SQVVNKNKNLEFLLQIVP--QKIRVHQF----QEMLRLNRSAGSDDDDDDDDDDDEEES 132
            .|.|..:...:||:..||  .....||.    .||:..:.:...|.|..::::..||.|
plant   127 FQAVKNSGTYDFLIDRVPFGPHCVTHQGVQPPAEMILPDMNVPIDMDQIEEENMMEERS 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chrac-16NP_572776.1 HFD_CHRAC1-like 20..96 CDD:467049 23/77 (30%)
NF-YC12NP_198630.2 HFD_NFYC-like 67..144 CDD:467033 23/79 (29%)

Return to query results.
Submit another query.