DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and Svep1

DIOPT Version :9

Sequence 1:NP_001285146.1 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_038966967.1 Gene:Svep1 / 685899 RGDID:1588987 Length:3705 Species:Rattus norvegicus


Alignment Length:1302 Identity:308/1302 - (23%)
Similarity:439/1302 - (33%) Gaps:417/1302 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 CGPPAVPLN-----------AKVR-------TITVDSQ--------------------------- 77
            ||.|.||.|           :|||       |:..|.:                           
  Rat  1983 CGAPPVPENGGVDGSAFTYGSKVRYRCDKGYTLAGDEESACLASGSWSHSSPVCELVKCSQPENI 2047

  Fly    78 ------------IAEAHYECDAGYELFGPSAVKCDRRTGWDRDLPFC-----------------G 113
                        ::.|.|.|:.||.|.|||.::|.....|||..|.|                 |
  Rat  2048 NNGKYILSGLTYLSIASYSCEDGYSLQGPSLIECTASGSWDRAPPSCQLVSCGEPPMVKDALTTG 2112

  Fly   114 VNVAYRKPVN---QSSYTRSGPAS---YANDGKPGNKNPDGQECSETQKEPSPWWRVDLLTPQAV 172
            .|..:...|.   :..||.:||.:   .||    |..|....:|.....:..|  .||..:|:..
  Rat  2113 SNFTFGNMVTYTCKEGYTLAGPDTIICQAN----GKWNSSNHQCLAVSCDEPP--NVDHASPETA 2171

  Fly   173 HVVRITTR--GCCGHQPLQDLEIRVGNSSADL-----QRNPLCAWY----PGTLDEGVVKTFTCA 226
            |.:...|.  .|.....|.|....:.|:..:.     |..|.|..:    |.::...::::.:.|
  Rat  2172 HRLFGDTAFYYCADGYSLADNSQLICNAQGNWVPPEGQAVPRCIAHFCEKPPSVSYSILESVSKA 2236

  Fly   227 RPLVGQYVAIQLVGVEGSL--SLCEVETFTNDEFSVD----RCLSPKIGVDTVVT---------- 275
            :...|..|:.:.  :||.:  :..::|.....::|..    :|:..:.|....:|          
  Rat  2237 KFAAGSVVSFKC--MEGFVLNTSAKIECLRGGQWSPSPLSVQCIPVRCGEPPSITNGYPSGTNYS 2299

  Fly   276 ---TFSKTCYDFHITKGESFDKAQAICKQTGGDLVHDFRGATSSYILSELERRKSELKPQLVWIG 337
               ..:.:|:.....|||.    ::.|:.||                                  
  Rat  2300 FGAVVAYSCHKGFYIKGEK----KSTCEATG---------------------------------- 2326

  Fly   338 AQKEPGITSRTWKWVNGDVVQKPTWGKDQPNNYNGEQNCVVLDGGRNWLWNDVG----------C 392
                        :|........|....:.|...||            :|.:..|          |
  Rat  2327 ------------QWSRPLPTCHPVSCNEPPKVENG------------FLEHTTGRTFESEARFQC 2367

  Fly   393 NLDYLH-----FICQ-----HS-------PLSCGSPDAQQNTTVMGKKFTLGEKIQYTC------ 434
            |..|..     |:||     ||       ||:||.|...||..:.|:.|.:|.|:|:.|      
  Rat  2368 NPGYKAVGSPVFVCQANRHWHSDAPLSCTPLNCGKPPPIQNGFLRGESFEVGSKVQFVCNEGYEL 2432

  Fly   435 -------------------PK----------------------------------GHSLLGQTER 446
                               ||                                  ||:|.|.:..
  Rat  2433 VGDNSWTCQKSGKWSKKPSPKCVPTKCAEPPLLENQLVLKELTSEVGVMTISCKEGHALQGPSVL 2497

  Fly   447 ECRLDGTWSGSSPTCKYVDCGSLPELKFGSIHMSEERTSFGVVATYSCHENYTLIGNENRTCAMD 511
            :|...|.|:||.|.||.|.|.|.|.:.|| :..|.....||....|.|.:.:.|.||....|.:|
  Rat  2498 KCLPSGQWNGSFPVCKLVLCQSPPLIPFG-VPASSGALHFGSTVKYLCVDGFFLRGNPIILCQVD 2561

  Fly   512 G-WSGKQPECLVDWCPDPQPIAGGDVRFNDKRAGSTATYVCEPGYVLVGEAIISCGLGGEWSSKT 575
            | ||...|||:...||.|:.|..|.:........||..|.|:||:.|||.....||..|:|....
  Rat  2562 GTWSSPLPECVPVECPQPEEILNGIIHVQGLAYLSTTLYTCKPGFELVGNTTTLCGENGQWLGGK 2626

  Fly   576 PSCRFVDCGAPARPNRGIAILLNG-----TTTVNSVVKYECDEDHWLDGQSELYCTREGKWSGEA 635
            |.||.::|..|..       :|||     :......:.|.||....|:|...|.|...|.|..:|
  Rat  2627 PMCRPIECPEPKE-------ILNGQFSSVSFQYGQTITYSCDRGFRLEGPKSLTCLETGNWDMDA 2684

  Fly   636 PVCELVTCETPSVPSGSFVIGYDYN-----VHS-------------------------------- 663
            |.|..:.|..|......||.|.||.     ::|                                
  Rat  2685 PSCNAIHCSDPQPIENGFVEGADYRYGAMIIYSCFPGFQVVGHAMQTCEETGWSSSSPTCVPIDC 2749

  Fly   664 ----------------------------------------------------------------- 663
                                                                             
  Rat  2750 GLPPHIDFGDCTRVSDGQGYFVQEDDMMEVPYLTPHPQHLEATAKASEITEESLVPHASQFLYGT 2814

  Fly   664 KIQYNCDPGHIMHGTPVLECLDSGEWSADAPYCEYIDCGTILPI-PYGSHKYVTNTTYVGSEVVF 727
            .:.|.|:||:.:.|.|||.|.:.|.|:..||.|..|:|.  ||: |.....:.|.|| :||...:
  Rat  2815 TVSYRCEPGYELLGIPVLVCQEDGTWNGTAPSCISIECD--LPVAPENGFLHFTQTT-MGSAAQY 2876

  Fly   728 SCSQSHKLSGVLKRTCLESAVWSDASPKCEEIRCPEPKLAAHSLLSVTGNDRMYGRTLIRTSESS 792
            ||...|.|.|...|.||::..||...|:||.|.|.||....:.  |:.|||..|           
  Rat  2877 SCKPGHVLEGSHLRLCLQNKQWSGTVPRCEVISCSEPNPLGNG--SIKGNDYSY----------- 2928

  Fly   793 QNTAQTYKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAPEGINNGKVVLATN 857
                    :|.| .|.|:.||.:.|....||.::.||.|..|.|:.|:||:|....||:|   |.
  Rat  2929 --------LGVL-HYECDSGYVLNGTEKRTCQENKQWDGHEPVCLPVDCGSPPVPTNGQV---TG 2981

  Fly   858 ATY-YGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEAPECVEVVCDTPNINENLIVEAGPRAVGS 921
            ..| :...:.|.|...|.|.|...|:|..:|:||...|.||.|.|..|....|.:.:........
  Rat  2982 EEYTFQKEIAYSCGEGFILEGARSRVCLTNGSWSGTTPSCVPVRCPAPPQVANGVTDGLDYGFKK 3046

  Fly   922 VATFKCAKGRIMMGNDTRVCQKNGKWTGKSPTCRPVDCGRPLAIENGRVIVVNDSTLYGGSAEYH 986
            ..||.|.:|.::.|.....||.||.|..:.|.|:|..||.|..:..|  .....|..:||..:|.
  Rat  3047 EVTFHCLEGYVLQGTPKLTCQSNGTWDAEVPICKPATCGPPADLPQG--FPNGFSFFHGGHIQYQ 3109

  Fly   987 CIPNYNRIGQYLRKCTEDGAWSGKQPRCELATAEG---QETSELGTGVGIGATVIVALLVIFGLI 1048
            |...|...|...|:|..||:|||..|.|...|...   |:.:...|.:|.|.||.:.....|.|:
  Rat  3110 CFTGYKLHGNPSRRCLPDGSWSGSTPSCLPCTCSTPIIQQGTVNATDLGCGKTVQIECFKGFKLL 3174

  Fly  1049 FL 1050
            .|
  Rat  3175 GL 3176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_001285146.1 CCP 58..112 CDD:153056 25/110 (23%)
FTP 113..261 CDD:128870 33/166 (20%)
CLECT 281..403 CDD:153057 20/141 (14%)
CCP 408..462 CDD:153056 23/112 (21%)
CCP 466..520 CDD:153056 19/54 (35%)
CCP 525..579 CDD:153056 19/53 (36%)
CCP 583..639 CDD:153056 16/60 (27%)
PHA02927 637..897 CDD:222943 89/363 (25%)
CCP 643..697 CDD:153056 21/155 (14%)
CCP 701..757 CDD:153056 20/56 (36%)
Sushi <799..836 CDD:278512 13/36 (36%)
Sushi 841..896 CDD:278512 19/55 (35%)
CCP 901..955 CDD:153056 14/53 (26%)
CCP 959..1015 CDD:153056 19/55 (35%)
Svep1XP_038966967.1 VWA 222..396 CDD:395045
Ephrin_rec_like 448..498 CDD:400166
CCP 516..572 CDD:153056
CCP 576..632 CDD:153056
HYR 697..779 CDD:367105
DUF5011 781..859 CDD:413762
Ephrin_rec_like 1141..1188 CDD:400166
Ephrin_rec_like 1195..1242 CDD:400166
Ephrin_rec_like 1249..1296 CDD:400166
EGF 1333..1361 CDD:394967
EGF_CA 1367..1403 CDD:238011
EGF_CA 1405..1441 CDD:238011
EGF_CA 1443..1479 CDD:238011
EGF_CA 1481..1517 CDD:238011
EGF_CA 1519..1555 CDD:238011
PTX 1560..1758 CDD:238086
PHA02927 1780..2036 CDD:222943 11/52 (21%)
EGF_CA 1881..1919 CDD:214542
PHA02817 2036..>2145 CDD:165167 25/112 (22%)
PHA02927 2111..2335 CDD:222943 44/281 (16%)
PHA02927 2230..2455 CDD:222943 47/288 (16%)
PHA02831 2414..>2572 CDD:165176 40/158 (25%)
PHA02927 2537..2745 CDD:222943 60/214 (28%)
Sushi 2796..2847 CDD:395037 13/50 (26%)
PHA02639 2849..>3022 CDD:165022 66/200 (33%)
PHA02927 <2963..3138 CDD:222943 59/179 (33%)
PHA02927 3150..3365 CDD:222943 8/27 (30%)
PHA02927 3370..3602 CDD:222943
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10280
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45787
orthoMCL 1 0.900 - - OOG6_102627
Panther 1 1.100 - - LDO PTHR19325
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.910

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