DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and Srpx

DIOPT Version :10

Sequence 1:NP_511136.2 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_071969.1 Gene:Srpx / 64316 RGDID:70950 Length:464 Species:Rattus norvegicus


Alignment Length:393 Identity:93/393 - (23%)
Similarity:130/393 - (33%) Gaps:112/393 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 PGHIMHGTPVLECLDSGEWSA-----DAPYC-----EYIDCGTILPIPYGSHKYVTNTTYVGSEV 725
            ||   .|...||  |.|.||:     |.|:|     :|.|.....| |.|.:|     |.:|:..
  Rat    32 PG---SGDSPLE--DDGVWSSHSLYKDTPWCSPIKVKYGDVYCRAP-PGGYYK-----TALGTRC 85

  Fly   726 VFSCSQSHKLSGVLKRTCLESAVWSDASPKCEEIRCPEPKLAAHSLLSVTGNDRMYGRTLIRTSE 790
            ...|.:.::|.|..:..|..:..||| ...|::.|||                     ||...:.
  Rat    86 DIRCRKGYELHGSSQLVCQSNRRWSD-KVICKQKRCP---------------------TLTMPAN 128

  Fly   791 SSQNTAQTYKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAPEGINNGKVVLA 855
            ............:..:|.|..||.:.||...||.|:..|||....||.:|   |..|        
  Rat   129 GGFKCVDGAYFNSRCEYYCSPGYTLKGERTVTCMDNKAWSGRPASCVDME---PPRI-------- 182

  Fly   856 TNATYYGAAVLYECNVNFKLNGVSRRLC-----TEHGNWSHEAPECVEVVCDTPNINENLIVEAG 915
                              |...|..|:.     |...:|  |.||..:..       :.::.:..
  Rat   183 ------------------KCPSVKERIAEPNKLTVRVSW--ETPEGRDTA-------DGILTDVI 220

  Fly   916 PRAVGSVATFKCAKGRIMMGNDTRVCQKNGKWTGKSPTC------RPVDCGRPLAIENGRVIVVN 974
            .|.:...:.|.....:|......|...|.        ||      |...||:..|.|||.:...:
  Rat   221 LRGLPPGSNFPEGDHKIEYTVYDRAENKG--------TCKFRVKVRVRRCGKLNAPENGYMKCSS 277

  Fly   975 DSTLYGGSAEYHCIPNYNRIGQYLRKCTEDGAWSGKQPRCELATAEGQETSELGTGVGIGATVIV 1039
            |...||.:.|:.||..|...|...|.|..:.||||.:|.|            ....|.:|.....
  Rat   278 DGDNYGATCEFSCIGGYELQGSPARVCQSNLAWSGTEPSC------------AAMNVNVGVRTAA 330

  Fly  1040 ALL 1042
            |||
  Rat   331 ALL 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_511136.2 CCP 58..112 CDD:153056
FTP 113..261 CDD:128870
CLECT 281..403 CDD:153057
PHA02927 <408..578 CDD:222943
PHA02927 <508..696 CDD:222943 11/29 (38%)
PHA02639 643..>837 CDD:165022 45/175 (26%)
PHA02927 798..1014 CDD:222943 54/226 (24%)
SrpxNP_071969.1 PHA02927 <53..175 CDD:222943 36/149 (24%)
CCP 120..175 CDD:153056 16/75 (21%)
HYR 175..257 CDD:460572 19/127 (15%)
CCP 262..317 CDD:153056 21/54 (39%)
DUF4174 332..451 CDD:463980 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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