DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and csmd3b

DIOPT Version :9

Sequence 1:NP_001285146.1 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_021323861.1 Gene:csmd3b / 572419 ZFINID:ZDB-GENE-120214-1 Length:3603 Species:Danio rerio


Alignment Length:1397 Identity:317/1397 - (22%)
Similarity:474/1397 - (33%) Gaps:428/1397 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 YECDAGYELFGPSAVKC--DRRTGWDRDLP----FCGVNVAYRKPVNQSSYTRSGPASYANDGKP 141
            :||..||.|.|.:::.|  .....|:..:|    .||.|:.   .:|.:.::...||.|      
Zfish  2143 FECLPGYSLIGETSLTCLHGISRNWNNPIPRCE
ALCGGNIT---SMNGTIFSPGHPAEY------ 2198

  Fly   142 GNKNPDGQECSETQKEPSPWWRVDLLTPQAVHV--VRITTRGCCGHQPLQDLEIRVGNSSADLQR 204
                |:.|:|.         |.|.:.....:::  ..::|      :|:.|. |.|.:...  |.
Zfish  2199 ----PNFQDCV---------WSVRVPPGNGIYINFTVLST------EPIYDY-ITVWDGPD--QS 2241

  Fly   205 NPLCAWYPG-TLDEGVVKT-----------FTCARPLVGQYVAIQLVGVEGSLSLCEVETFTND- 256
            :|....:.| |..|.|..|           |:.:...|..|.|.||...:..|.:...:....| 
Zfish  2242 SPQIGQFSGNTALESVYSTSNQILIKFHSDFSGSGFFVLSYHAYQLRVCQPPLEVANADILMEDN 2306

  Fly   257 EFSVD-----RCLSPKIGVDTVVTTFSKTCYDFHITKGESFD------KAQAICKQTGGDLVHDF 310
            |..:.     || .|..   |:|.:...||     ..||...      ..|..|.      .||.
Zfish  2307 ELEIGDIIRYRC-HPGF---TLVGSEILTC-----RLGERLQMDGHPPSCQ
VQCP------AHDV 2356

  Fly   311 RGATSSYILS-----------------------------ELERRKSELKPQLVWIGAQKEPGITS 346
            |..:|..|||                             |..:.:.|.....|:.|    |.|.|
Zfish  2357 RFDSSGVILSPGYPDSYPNLQMCSWSINVEKGYNITLFFEFFQTEKEYDILEVFDG----PTIHS 2417

  Fly   347 RTWKWVNGDVVQKPT--------------WGKDQPNN-------YNGEQN---CVVLD------- 380
            :|...::||:   ||              |..|...|       |.||..   |...|       
Zfish  2418 QTLATLSGDL---PTPFNMTTSGHQLLLRWSADHGTNKKGFSIRYVGEYQTLYCSTPDSPLHGSI 2479

  Fly   381 ----GGR-NWL--WNDVGCNLDYLHF-----ICQHSP---------------LSCGSPDAQQNTT 418
                ||. |.|  |.   |:..|...     :|:.:|               :|||.|.|..|..
Zfish  2480 SSQTGGHLNSLVRWT---CDRGYRLIGKSTAVCKKTPFGFYDWDAPVPACQAVSCGVPKAPVNGG 2541

  Fly   419 VMGKKFTLGEKIQYTCPKGHSLLGQ--TERECRLDGTWSGSS----------------------- 458
            |:...:::|.::.|.|..|:.|..:  |...|:.|||||..:                       
Zfish  2542 VLAMDYSVGTRVTYFCSDGYRLSSKELTSAVCQPDGTWSNHNKVPRCSVVVCPSIGSFSLEHGRW 2606

  Fly   459 --------------------------------------------PTCKYVDCGSLPE----LKFG 475
                                                        |.|:.:.||.|..    .|.|
Zfish  2607 RIVNGSHYEYRTKIIFTCDPGYYRLGPAYIQCMANGAWSWKNERPHCQIISCGDLATPPSGKKIG 2671

  Fly   476 SIHMSEERTSFGVVATYSCHENYTLIGNENRTCAMDG-WSGKQPECLVDWCPDPQPIAGGDVRFN 539
            :      :||||..|.::|...|.|:|:..|.|...| |||.:..||...|..|:.|..|.|...
Zfish  2672 T------QTSFGATAIFTCDNGYMLVGSSVRECLSSGLWSGTETRCLAGHCGLPEQIVNGQVIGE 2730

  Fly   540 DKRAGSTATYVCEPGYVLVGEAIISCGLGGEWSSKTPSCRFVDCGAPARPNRGIAILLNGTTTVN 604
            :.....|..|.|..|:.|:|.::..|.....||.:.|.|..:.||.|..|..|..| .|| ..:|
Zfish  2731 NFGYRDTVVYQCVSGFRLIGSSVRICQQDHNWSGQLPICVPISCGHPGSPIYGRTI-GNG-FNLN 2793

  Fly   605 SVVKYECDEDHWLDGQSELYCTREGKWSGEAPVCELVTCETPSVPS----------GSFVIGYDY 659
            .||.:.|:..:.::|.|...|....:||...|.|::|.|..|.:|:          |:|..|   
Zfish  2794 DVVSFSCNMGYVMEGPSRAQCQANRQWSQPPPTCKVVNCSDPGIPANSIRQSKIEHGNFTFG--- 2855

  Fly   660 NVHSKIQYNCDPGHIMHGTPVLECLDSGEWSADAPYCEYIDCGTILPIPYG---SHKYVTNTTYV 721
               :.:.|:|:||:.:.|:|||.|..:|:|....|.|..:|||.....|.|   ..|:.     .
Zfish  2856 ---TVVFYDCNPGYYLFGSPVLTCQPTGQWDKPLPECIVVDCGHPGSPPNGLLSGDKFT-----F 2912

  Fly   722 GSEVVFSCSQSHKLSGVLKRTCLESAVWSDASPKC---EEIRCPEPKLAAHSLLSVTGNDRMYGR 783
            |:.|.:||:...:|.|...|||..:..||...|.|   ....|.:|...:|.             
Zfish  2913 GATVRYSCTGGRQLKGESSRTCQLNGHWSAPMPFCSGDSSGTCGDPGTPSHG------------- 2964

  Fly   784 TLIRTSESSQNTAQTYKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAPEGIN 848
               ...||.      ::|.:...:.|..||::.|.....|..:|.||||.|.|..|:||.|...:
Zfish  2965 ---SRDESD------FRIRSKVHFSCSVGYELFGSVERMCFPNGTWSGTQPSCKPVQCGNPGTPS 3020

  Fly   849 NGKVVLATNATYYGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEAPECVEVVCDTPNINENLIVE 913
            ||: |...:.|.:..:|:|.|...:.|:|.:.|.|..:|.||..||.|..:.|..|.:..|.:..
Zfish  3021 NGR-VYRLDGTTFSHSVIYSCMDGYLLSGSTTRQCQANGTWSGTAPNCTLINCGEPGVPANGLRY 3084

  Fly   914 AGPRAVGSVATFKCAKGRIMMGN--DTRVCQKNGKWTGKSPTCRPVDCGRPLAIENGRVIVVNDS 976
            .....:....||.|..|..|...  .|..|..||.|....|.|:.|.|..|..|.||  ::....
Zfish  3085 GEDFTIAQNITFMCQPGYTMEAESFSTITCTGNGTWNAPVPFCKAVTCTAPPPISNG--LLEGRD 3147

  Fly   977 TLYGGSAEYHCIPNYN------------------------------------------------- 992
            ..:|.|..|.|.|.|.                                                 
Zfish  3148 FEWGTSVSYSCSPGYELSFPAILTCVGNGTWSGEVPQCLPKFCGDPGTPAFGSREGRSFIYQSEV 3212

  Fly   993 ---------RIGQYLRKCTEDGAWSGKQPRC---ELATAEGQETSELGT-----GVGIGATVIVA 1040
                     .:|...|.|..||.|||.||||   ...|.|...|...|:     |..:|:     
Zfish  3213 SFSCMAPYIPVGSTTRICQTDGTWSGSQPRCIEPTRTTCENPGTPRYGSLNRTFGFKVGS----- 3272

  Fly  1041 LLVIFGLIFLYRNKARP-----VKNTENVQAAETKDERNAAVMSYSTLEANNRMHMD----NNPS 1096
             :|.|        :.:|     ...|...||..|........:.:|..:..:..|:|    :.||
Zfish  3273 -MVAF--------QCQPGHLLQGSTTRLCQADLTWSGTQPECIPHSCKQPESPPHVDVVGMDLPS 3328

  Fly  1097 ATFNTFHGGAGGRSNGGGN------PDANSNGE----RLNNNRSENIYDQIPNEQFYDAPYEMRT 1151
            ..:...:....|....||:      .|....|:    |..:..||.....:|..   .:| ::..
Zfish  3329 YGYTLIYSCQSGFFLSGGSEHRVCRSDGTWTGKMPVCRAGSKLSEKPIKPVPGT---PSP-KLNV 3389

  Fly  1152 NDEVYEP--------------EPVASNVITIN 1169
            .|:|:.|              :|:..::.:.|
Zfish  3390 PDDVFAPNYIWKGSYNYKGRKQPMTLSITSFN 3421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_001285146.1 CCP 58..112 CDD:153056 9/34 (26%)
FTP 113..261 CDD:128870 32/162 (20%)
CLECT 281..403 CDD:153057 40/199 (20%)
CCP 408..462 CDD:153056 19/122 (16%)
CCP 466..520 CDD:153056 20/58 (34%)
CCP 525..579 CDD:153056 15/53 (28%)
CCP 583..639 CDD:153056 18/55 (33%)
PHA02927 637..897 CDD:222943 78/275 (28%)
CCP 643..697 CDD:153056 18/63 (29%)
CCP 701..757 CDD:153056 18/61 (30%)
Sushi <799..836 CDD:278512 12/36 (33%)
Sushi 841..896 CDD:278512 19/54 (35%)
CCP 901..955 CDD:153056 14/55 (25%)
CCP 959..1015 CDD:153056 23/116 (20%)
csmd3bXP_021323861.1 CUB 64..170 CDD:238001
CCP 177..235 CDD:153056
CUB 240..343 CDD:238001
CCP 381..439 CDD:153056
CUB 443..551 CDD:238001
CCP 559..613 CDD:153056
CUB 616..723 CDD:238001
CCP 729..787 CDD:153056
CUB 790..897 CDD:238001
CCP 905..958 CDD:153056
CUB 962..1070 CDD:238001
CCP 1077..1133 CDD:153056
CUB 1136..1243 CDD:238001
CCP 1249..1306 CDD:153056
CUB 1309..1417 CDD:238001
Sushi 1423..1479 CDD:306569
CUB 1483..1590 CDD:238001
Sushi 1596..1653 CDD:306569
CUB 1657..1764 CDD:238001
CCP 1773..1831 CDD:153056
CUB 1834..1941 CDD:238001
Sushi 1947..2002 CDD:306569
CUB 2006..2113 CDD:238001
CCP 2119..2175 CDD:153056 9/31 (29%)
CUB 2178..2284 CDD:238001 27/136 (20%)
CCP 2290..2348 CDD:153056 12/66 (18%)
CUB 2360..2459 CDD:238001 19/105 (18%)
CCP 2468..2527 CDD:153056 11/61 (18%)
CCP 2526..2770 CDD:332582 58/249 (23%)
CCP 2655..2890 CDD:332582 76/248 (31%)
CCP 2827..3067 CDD:332582 78/273 (29%)
CCP 2991..3244 CDD:332582 67/255 (26%)
CCP 3251..3306 CDD:153056 12/68 (18%)
CCP 3310..3366 CDD:153056 9/55 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BCEG
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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