DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and rca2.2

DIOPT Version :9

Sequence 1:NP_001285146.1 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_009295212.1 Gene:rca2.2 / 565541 ZFINID:ZDB-GENE-060503-646 Length:392 Species:Danio rerio


Alignment Length:459 Identity:117/459 - (25%)
Similarity:179/459 - (38%) Gaps:107/459 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   475 GSIHMSEERTSFGVV----ATYSC-------HENYTLIGNENRTCAMDGWSGKQPECLVDWCPDP 528
            |.:|.|.....|.::    |...|       ....||...|:|.....|:          :.|..
Zfish     2 GKVHQSSNTMGFELLHLCSAALLCILKAANIEGQCTLPSFESRNVTSSGY----------YSPGH 56

  Fly   529 QPIAGGDVRFNDKRAGSTATYVCEPGYVLV-GEAI--ISCGLGGEWSSKTPSCRFVDCGAPARPN 590
                    .|.|   ||..|:.|..|:..| ..||  |:| :..:|::...||....||:|..  
Zfish    57 --------TFQD---GSVLTFECMSGHKPVDSRAIKSITC-MRSQWTNLGLSCTRKSCGSPPE-- 107

  Fly   591 RGIAILLNGTTTVNSV-----VKYECDEDHWLDGQ--SELYCTREGKWSGEAPVCELVTCETPSV 648
                 ..||...:..|     :|..|::...|.|.  ::..| |:|.|....||||.|.|..|..
Zfish   108 -----FANGRYEITGVLFGDTIKPICNKGFMLVGYGLTQRVC-RDGGWDSRDPVCESVKCAAPPT 166

  Fly   649 PSGSFVI-----GYDYNVHSKIQYNCDPGHIMHGTPVLECLDSGEWSADAPYCEYIDCGTILP-I 707
            .....::     .|:|.  ..:.|.|:.|..:.|:|.|.|.|.|.:..|.|.|  :| |...| |
Zfish   167 VENGHLLHEPLESYEYT--HVLTYRCNSGFSLSGSPNLHCSDDGTFKPDPPKC--LD-GCPKPEI 226

  Fly   708 PYGSHKYVTNTTY-VGSEVVFSCSQSHKLSGVLKRTCLESAVWSDASPKCEEIRCPEPKLAAHSL 771
            |:.......:..| :|..:.:.|...:.|.|:.:..|.... |....|||.| .|..|.      
Zfish   227 PHAIRIGGKSPPYKIGHFIEYKCQDLYTLKGIKEIACTAEG-WDPEPPKCIE-PCSLPD------ 283

  Fly   772 LSVTGNDRMYGRTLIRTSE-SSQNTAQTYKIGALAKYRCERGYKMVGEALA---TCTDSGQWSGT 832
                     :||.:..|.| ||:|   .:..|:...::|..||:.|....:   ||.:: :|:. 
Zfish   284 ---------FGRKVTLTKEFSSKN---LFPHGSKVTFKCSSGYEPVDSTASNSVTCEET-KWTK- 334

  Fly   833 IPECVYVECGA----PEGINNGKVVLATNATYYGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEA 893
                :::.|.|    |..|.|||:          .||:|:||..|.|||.|..|.:|.|.:..:.
Zfish   335 ----LHLTCKAKPQPPPVIENGKI----------EAVIYKCNSGFFLNGSSMLLFSEDGTFEQDP 385

  Fly   894 PECV 897
            |:|:
Zfish   386 PKCL 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_001285146.1 CCP 58..112 CDD:153056
FTP 113..261 CDD:128870
CLECT 281..403 CDD:153057
CCP 408..462 CDD:153056
CCP 466..520 CDD:153056 11/55 (20%)
CCP 525..579 CDD:153056 15/56 (27%)
CCP 583..639 CDD:153056 16/62 (26%)
PHA02927 637..897 CDD:222943 74/274 (27%)
CCP 643..697 CDD:153056 15/58 (26%)
CCP 701..757 CDD:153056 13/57 (23%)
Sushi <799..836 CDD:278512 8/39 (21%)
Sushi 841..896 CDD:278512 21/58 (36%)
CCP 901..955 CDD:153056
CCP 959..1015 CDD:153056
rca2.2XP_009295212.1 PHA02927 20..276 CDD:222943 72/291 (25%)
CCP 102..157 CDD:153056 16/62 (26%)
Sushi 161..217 CDD:278512 15/57 (26%)
CCP 221..276 CDD:153056 12/55 (22%)
CCP <295..340 CDD:153056 11/53 (21%)
CCP 345..388 CDD:153056 19/52 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1703
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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