DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and pamr1a

DIOPT Version :10

Sequence 1:NP_511136.2 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:XP_068078821.1 Gene:pamr1a / 560295 ZFINID:ZDB-GENE-161017-116 Length:811 Species:Danio rerio


Alignment Length:522 Identity:125/522 - (23%)
Similarity:188/522 - (36%) Gaps:168/522 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 DWCPDPQPIAGGDVRFNDKRAGSTATY-----VCEPGYVLVGEAIISCGLGGEWSSKTPSCRFV- 581
            |.||.||..|         ...:...|     .|....|.||.|:             |.||.| 
Zfish    64 DKCPGPQWNA---------MCRTCCEYEQIACKCPSQGVKVGYAV-------------PCCRNVL 106

  Fly   582 -DCGAPARPNRGIAILLNGTTTVNSVVKYECDEDHWLDGQSELYCT--REGKWSGEAPVCELVTC 643
             :|. |...::|.:|..|..|..|..  ::..:|.::.|:   |||  |:| |||.    :.:||
Zfish   107 DECD-PCILHQGCSIFDNCKTCSNGT--WQAKDDFYIRGR---YCTSCRQG-WSGG----DCLTC 160

  Fly   644 -ETPSVPSGSFVIGYDYNVHSKIQYNCDPGHIMHGTPV-----LECLDSGEWSADAPYCEYID-- 700
             |....|.|...: ..|.:::|.::....|   .||.:     :..|:| :.|....|.|..|  
Zfish   161 GEVIQRPHGHVTL-ESYPINAKCEWTLKVG---RGTTMELRFSMISLES-DHSCQYDYVEVRDGD 220

  Fly   701 ----------CGTILPIPYGS-----HKYVTNTTYVGSEVVFSCSQSHKLSGVLKRTCLESAVWS 750
                      ||...|.|..|     |....:..|...:..|:..|  ::||.....|       
Zfish   221 SLKSPVIGRYCGDESPGPIKSSGNSLHIRFVSDGYNNYDGFFATFQ--EVSGQAPALC------- 276

  Fly   751 DASPKCEEIRCPEPKLAAHSLLSVTGNDRMYGRTLIRTSESSQNTAQTYKIGAL---AKYRCERG 812
             |:||       :|           .|..::.|               |..|.|   |:|.|.:.
Zfish   277 -ATPK-------KP-----------ANGDLFLR---------------YNEGGLLHSAQYLCYKP 307

  Fly   813 YKMVGEALATCTDSGQWSGTIPECV----YVECGAPEGINNG--KVVLATNATYYGAAVLYECNV 871
            |::.|.:...|..:|.||||.|.|:    ..:|.||..::||  ..:.|:|...  ..|.|.||.
Zfish   308 YQLKGASQRACLPNGTWSGTAPVCIKEVAIKDCPAPPQLHNGYSTEISASNGRL--KYVEYSCNN 370

  Fly   872 NFKLNGVSRRLCTEHGNWSHEAPECVEVVCDTPNIN----ENLIVEAGPRAVGSV---------- 922
            .:.|:|..||:|.::|:||...|.||. .|..|.::    :.|:....|.....|          
Zfish   371 TYILSGDWRRVCQKNGSWSGSQPMCVR-ACREPKVSKLVRQKLLKYQPPSRKSPVHKLYSASSQG 434

  Fly   923 AT---------------------------FKCAKGRIM-MGNDTRVCQKNGKWTGKSPTCRPVDC 959
            ||                           ::|...... .|:..|.|.|.|||:|:..:|.|. |
Zfish   435 ATEGDSRERAFPAFGDLPPTFHHVYTSIEYECVSALYKPSGSGRRTCLKTGKWSGRHFSCSPA-C 498

  Fly   960 GR 961
            |:
Zfish   499 GK 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_511136.2 CCP 58..112 CDD:153056
FTP 113..261 CDD:128870
CLECT 281..403 CDD:153057
PHA02927 <408..578 CDD:222943 13/59 (22%)
PHA02927 <508..696 CDD:222943 46/187 (25%)
PHA02639 643..>837 CDD:165022 48/219 (22%)
PHA02927 798..1014 CDD:222943 58/215 (27%)
pamr1aXP_068078821.1 CUB 160..266 CDD:238001 23/110 (21%)
PHA02639 268..>404 CDD:165022 49/179 (27%)
CCP 340..395 CDD:214478 20/56 (36%)
Tryp_SPc 561..809 CDD:238113
Blue background indicates that the domain is not in the aligned region.

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