DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and Csmd3

DIOPT Version :9

Sequence 1:NP_001285146.1 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_001074860.2 Gene:Csmd3 / 239420 MGIID:2386403 Length:3707 Species:Mus musculus


Alignment Length:1399 Identity:335/1399 - (23%)
Similarity:482/1399 - (34%) Gaps:376/1399 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 QICGPPAVPLNAKVRTITVDSQIAE-AHYECDAGYELFGPSAVKC--DRRTGWDRDLPFCGVNVA 117
            ::|.||....||::.|...:.:|.: ..|:|..|:.|.|.:.:.|  ..|...|...|.|.|.. 
Mouse  2393 RVCQPPPPVPNAEILTEDDEFEIGDIIRYQCLPGFTLVGNAILTCRLGERLQMDGAPPVCQVLC- 2456

  Fly   118 YRKPVNQSSYTRSG-------PASYANDGKPGNKNPDGQECS------------------ETQKE 157
               |.|:.....:|       |.||          |:.|.|:                  :|:||
Mouse  2457 ---PANELRLDSTGVILSPGYPDSY----------PNLQMCAWSISVEKGYNISMFVEFFQTEKE 2508

  Fly   158 PSPWWRVDLLT----PQAVHVVRITTRG---------CCGHQPLQDLEIRVGNSSADLQRNPLCA 209
                  .|:|.    |.....|.|:..|         ..||:.........||:.... |....|
Mouse  2509 ------FDVLQVYDGPNIQSPVLISLSGDYSAAFNVTSNGHEVFLQWSADHGNNKKGF-RIRYIA 2566

  Fly   210 WYPGTLDEGVVKTFTCARPLVGQYVAIQLVGVEGSLSLCEVETFTNDEFSVDRCLSPKIGVDTVV 274
            :|..|.:.          |..| |:..|..|...|:.          .::.||... .:|..:.|
Mouse  2567 FYCSTPES----------PPHG-YIISQTGGQLNSVV----------RWACDRGFR-LVGKSSAV 2609

  Fly   275 TTFSKTCYDFHITKGESFDKAQAICK----------QTGGDLVHDFRGAT-------SSYILSEL 322
            .  .|:.|.:|     |:|.....|:          ..||.|..|:...|       ..|.||..
Mouse  2610 C--RKSSYGYH-----SWDAPVPACQAISCGIPKAPTNGGILTTDYLVGTRVTYFCNDGYRLSSK 2667

  Fly   323 ERRKSELKPQLVWIGAQKE--------PGITSRT-----WKWVNG---DVVQKPTWGKDQPNNYN 371
            |...:..:....|....|.        |.|.|.|     |:.|||   :...|..:..|...:..
Mouse  2668 ELTTATCQSDGTWSNHNKTPRCVVVTCPSINSFTLDHGRWRIVNGSHYEYKTKVVFSCDPGYHGL 2732

  Fly   372 GEQNCVVLDGGRNWLW---------------------NDVGCNLDY---------LHFI------ 400
            |..:...|..| .|.|                     |.:|....|         |.|:      
Mouse  2733 GPASIECLPNG-TWSWRTERPYCQIISCGELPTPPNGNKIGTQTSYGSTAIFTCDLGFMLVGSAV 2796

  Fly   401 --CQHSPL-----------SCGSPDAQQNTTVMGKKFTLGEKIQYTCPKGHSLLGQTERECRLDG 452
              |..|.|           .||.|:...|..|:|:.:...:.:.|.|..|..|:|.:.|.|:.|.
Mouse  2797 RECLSSGLWSGSETRCLAGHCGIPELIVNGQVIGENYGYRDTVVYQCNPGFRLIGSSVRICQQDH 2861

  Fly   453 TWSGSSPTCKYVDCGSLPELKFGSIHMSEERTS-----FGVVATYSCHENYTLIGNENRTC-AMD 511
            .|||..|:|..|.||......:|       |||     |..|.|:||:..|.:.|.....| |..
Mouse  2862 NWSGQLPSCVPVSCGHPGSPIYG-------RTSGNGFNFNDVVTFSCNIGYLMQGPTKAQCQANR 2919

  Fly   512 GWSGKQPECLVDWCPDPQPIAGGDVRFNDKRA----------GSTATYVCEPGYVLVGEAIISCG 566
            .||...|.|.|..|.||      .:..|.||.          |:...|.|.|||.|.|.:::.|.
Mouse  2920 QWSHPPPVCKVVNCSDP------GIPANSKRESKIEHGNFTYGTVVFYDCNPGYFLFGSSVLICQ 2978

  Fly   567 LGGEWSSKTPSCRFVDCGAPARPNRGIAILLNGTTTVNSVVKYECDEDHWLDGQSELYCTREGKW 631
            ..|:|....|.|..:|||.|..|..  |:|.....|..|.|.|.|.....|.||:...|...|.|
Mouse  2979 PNGQWDKPLPECIMIDCGHPGIPPN--AVLSGEKYTFGSTVHYSCTGKRSLLGQASRTCQLNGHW 3041

  Fly   632 SGEAPVCE---LVTCETPSVPSGSFVIGYDYNVHSKIQYNCDPGHIMHGTPVLECLDSGEWSADA 693
            ||..|.|.   ..||..|..|........|:...|.:::.||.|:|::|:....||.:|.|:...
Mouse  3042 SGSQPHCSGDTTGTCGDPGTPGHGSRQESDFRTKSTVRFACDTGYILYGSEERTCLSNGSWTGRQ 3106

  Fly   694 PYCEYIDCGTILPIPYGSHKYVTNTTYVGSEVVFSCSQSHKLSGVLKRTCLESAVWSDASPKCEE 758
            |.|:.:.||.......|....:..||: .|.|::||.:.:.|||...|.|..:..||.:.|.|..
Mouse  3107 PECKAVQCGNPGTTANGKVFRIDGTTF-SSSVIYSCLEGYILSGPSVRQCTANGTWSGSLPNCTI 3170

  Fly   759 IRCPEPKLAAHSLLSVTGNDRMYGRTL---------IRTSESSQNTAQT---------------- 798
            |.|.:|.:.|:.|.  .|:|.:.|:.:         |..:.|...|..|                
Mouse  3171 ISCGDPGIPANGLR--YGDDFVVGQNVSYMCQPGYTIELNGSRVRTCTTNGTWSGVMPTCRAVTC 3233

  Fly   799 ---------------YKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAP---- 844
                           :..|....|.|..||::...|:.||..:|.|||.:|:|:...||.|    
Mouse  3234 STPPQISNGRLEGTNFDWGFSISYICSAGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPS 3298

  Fly   845 EGINNGKVVLATNATYYGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEAPECVE---VVCDTPNI 906
            :|...||..:      |.:.|.:.||..|.|.|.|.|||...|.||..:|.|:|   ..|:.|.:
Mouse  3299 QGKREGKSFI------YQSEVSFSCNSPFILVGSSTRLCQTDGTWSGSSPHCIEPTRTSCENPGV 3357

  Fly   907 NENLIVEAGPR----------AVGSVATFKCAKGRIMMGNDTRVCQKNGKWTGKSPTCRPVDCGR 961
                     ||          .||||..|.|.||.::.|:.||.|..:..|:|..|.|.|..|.:
Mouse  3358 ---------PRHGSQNNTFGFQVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQ 3413

  Fly   962 PLAIENGRVIVVNDSTLYGGSAEYHCIPNYNRI-GQYLRKCTEDGAWSGKQPRCELAT------- 1018
            |.:..:..|:.: |...:|.:..|.|.|.:... |...|.|..|..|:||.|.||..:       
Mouse  3414 PESPAHANVVGM-DLPSHGYTLIYTCQPGFFLAGGTEHRVCRSDNTWTGKVPVCEAGSKILVKDP 3477

  Fly  1019 --AEGQETSELGTGVGIGATVIVALLVIFGLIFL----YRNKARPVKNTENVQAAETKDERNAAV 1077
              |.|..:.:|.....           :|...::    |..|.|....|..|.:......|..|.
Mouse  3478 RPALGTPSPKLSVPDD-----------VFAQNYIWKGSYNFKGRKQPMTLTVTSFNASTGRVNAT 3531

  Fly  1078 MS-----------YSTLEANNRMH---------------------MDN----NPSATFNTFHGGA 1106
            :|           |.:.||...:|                     ||.    .|......|.|..
Mouse  3532 LSNSDMELLLSGVYKSQEARLMLHIYLIKVPAHASVKKMKEENWAMDGFVSAEPDGATYVFQGFI 3596

  Fly  1107 GGRSNG-------GGNPDANSNGERLNNNRSEN---------------------IYDQ--IPNEQ 1141
            .|:..|       |.|....||.....:..:.:                     :|.|  .|..|
Mouse  3597 KGKDYGQFGLQRLGLNTSEGSNSSNQPHGTNSSSVAIAILVPFFALIFAGFGFYLYKQRTAPKTQ 3661

  Fly  1142 FYD-APYEMRTNDEVYEPEPVASNVITINGISVR 1174
            :.. :.:|.......:|.....:|..::.|.:||
Mouse  3662 YTGCSVHENNNGQAAFENPMYDTNAKSVEGKAVR 3695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_001285146.1 CCP 58..112 CDD:153056 16/56 (29%)
FTP 113..261 CDD:128870 33/185 (18%)
CLECT 281..403 CDD:153057 37/192 (19%)
CCP 408..462 CDD:153056 18/53 (34%)
CCP 466..520 CDD:153056 18/59 (31%)
CCP 525..579 CDD:153056 18/63 (29%)
CCP 583..639 CDD:153056 20/55 (36%)
PHA02927 637..897 CDD:222943 83/306 (27%)
CCP 643..697 CDD:153056 15/53 (28%)
CCP 701..757 CDD:153056 17/55 (31%)
Sushi <799..836 CDD:278512 13/36 (36%)
Sushi 841..896 CDD:278512 21/58 (36%)
CCP 901..955 CDD:153056 19/63 (30%)
CCP 959..1015 CDD:153056 16/56 (29%)
Csmd3NP_001074860.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
CUB 65..171 CDD:238001
CCP 178..236 CDD:153056
CUB 241..343 CDD:238001
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..437
CCP 486..544 CDD:153056
CUB 548..656 CDD:238001
CCP 664..718 CDD:153056
CUB 721..828 CDD:238001
CCP 834..891 CDD:153056
CUB 895..1002 CDD:238001
CCP 1010..1063 CDD:153056
CUB 1067..1175 CDD:238001
CCP 1182..1238 CDD:153056
CUB 1241..1348 CDD:238001
CCP 1354..1411 CDD:153056
CUB 1414..1522 CDD:238001
Sushi 1528..1584 CDD:278512
CUB 1588..1695 CDD:238001
CCP 1701..1758 CDD:153056
CUB 1762..1869 CDD:238001
CCP 1878..1936 CDD:153056
CUB 1939..2046 CDD:238001
CCP 2052..2107 CDD:153056
CUB 2111..2218 CDD:238001
CCP 2224..2280 CDD:153056
CUB 2283..2389 CDD:238001
CCP 2395..2453 CDD:153056 16/57 (28%)
CUB 2460..2566 CDD:238001 21/122 (17%)
CCP 2569..2628 CDD:153056 16/87 (18%)
PHA02927 2627..2871 CDD:222943 53/244 (22%)
CCP 2632..2689 CDD:214478 11/56 (20%)
CCP 2694..2755 CDD:153056 15/61 (25%)
PHA02927 2756..2991 CDD:222943 66/247 (27%)
CCP 2759..2812 CDD:153056 8/52 (15%)
CCP 2817..2871 CDD:153056 18/53 (34%)
CCP 2875..2929 CDD:153056 18/60 (30%)
PHA02927 2927..3168 CDD:222943 77/249 (31%)
CCP 2933..2991 CDD:153056 18/63 (29%)
CCP 2995..3048 CDD:153056 20/54 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3052..3071 4/18 (22%)
CCP 3056..3110 CDD:153056 15/53 (28%)
CCP 3114..3168 CDD:153056 17/54 (31%)
PHA02927 3168..3407 CDD:222943 69/255 (27%)
CCP 3173..3229 CDD:153056 11/57 (19%)
Sushi 3233..3286 CDD:278512 13/52 (25%)
CCP 3291..3345 CDD:153056 21/59 (36%)
CCP 3352..3407 CDD:153056 19/63 (30%)
CCP 3411..3467 CDD:153056 16/56 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 62 1.000 Domainoid score I10279
eggNOG 1 0.900 - - E33208_3BCEG
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43710
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3908
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.840

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