DRSC/TRiP Functional Genomics Resources

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Protein Alignment fw and Csmd3

DIOPT Version :10

Sequence 1:NP_511136.2 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_001074860.2 Gene:Csmd3 / 239420 MGIID:2386403 Length:3707 Species:Mus musculus


Alignment Length:1399 Identity:335/1399 - (23%)
Similarity:482/1399 - (34%) Gaps:376/1399 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 QICGPPAVPLNAKVRTITVDSQIAE-AHYECDAGYELFGPSAVKC--DRRTGWDRDLPFCGVNVA 117
            ::|.||....||::.|...:.:|.: ..|:|..|:.|.|.:.:.|  ..|...|...|.|.|.. 
Mouse  2393 RVCQPPPPVPNAEILTEDDEFEIGDIIRYQCLPGFTLVGNAILTCRLGERLQMDGAPPVCQVLC- 2456

  Fly   118 YRKPVNQSSYTRSG-------PASYANDGKPGNKNPDGQECS------------------ETQKE 157
               |.|:.....:|       |.||          |:.|.|:                  :|:||
Mouse  2457 ---PANELRLDSTGVILSPGYPDSY----------PNLQMCAWSISVEKGYNISMFVEFFQTEKE 2508

  Fly   158 PSPWWRVDLLT----PQAVHVVRITTRG---------CCGHQPLQDLEIRVGNSSADLQRNPLCA 209
                  .|:|.    |.....|.|:..|         ..||:.........||:.... |....|
Mouse  2509 ------FDVLQVYDGPNIQSPVLISLSGDYSAAFNVTSNGHEVFLQWSADHGNNKKGF-RIRYIA 2566

  Fly   210 WYPGTLDEGVVKTFTCARPLVGQYVAIQLVGVEGSLSLCEVETFTNDEFSVDRCLSPKIGVDTVV 274
            :|..|.:.          |..| |:..|..|...|:.          .::.||... .:|..:.|
Mouse  2567 FYCSTPES----------PPHG-YIISQTGGQLNSVV----------RWACDRGFR-LVGKSSAV 2609

  Fly   275 TTFSKTCYDFHITKGESFDKAQAICK----------QTGGDLVHDFRGAT-------SSYILSEL 322
            .  .|:.|.:|     |:|.....|:          ..||.|..|:...|       ..|.||..
Mouse  2610 C--RKSSYGYH-----SWDAPVPACQAISCGIPKAPTNGGILTTDYLVGTRVTYFCNDGYRLSSK 2667

  Fly   323 ERRKSELKPQLVWIGAQKE--------PGITSRT-----WKWVNG---DVVQKPTWGKDQPNNYN 371
            |...:..:....|....|.        |.|.|.|     |:.|||   :...|..:..|...:..
Mouse  2668 ELTTATCQSDGTWSNHNKTPRCVVVTCPSINSFTLDHGRWRIVNGSHYEYKTKVVFSCDPGYHGL 2732

  Fly   372 GEQNCVVLDGGRNWLW---------------------NDVGCNLDY---------LHFI------ 400
            |..:...|..| .|.|                     |.:|....|         |.|:      
Mouse  2733 GPASIECLPNG-TWSWRTERPYCQIISCGELPTPPNGNKIGTQTSYGSTAIFTCDLGFMLVGSAV 2796

  Fly   401 --CQHSPL-----------SCGSPDAQQNTTVMGKKFTLGEKIQYTCPKGHSLLGQTERECRLDG 452
              |..|.|           .||.|:...|..|:|:.:...:.:.|.|..|..|:|.:.|.|:.|.
Mouse  2797 RECLSSGLWSGSETRCLAGHCGIPELIVNGQVIGENYGYRDTVVYQCNPGFRLIGSSVRICQQDH 2861

  Fly   453 TWSGSSPTCKYVDCGSLPELKFGSIHMSEERTS-----FGVVATYSCHENYTLIGNENRTC-AMD 511
            .|||..|:|..|.||......:|       |||     |..|.|:||:..|.:.|.....| |..
Mouse  2862 NWSGQLPSCVPVSCGHPGSPIYG-------RTSGNGFNFNDVVTFSCNIGYLMQGPTKAQCQANR 2919

  Fly   512 GWSGKQPECLVDWCPDPQPIAGGDVRFNDKRA----------GSTATYVCEPGYVLVGEAIISCG 566
            .||...|.|.|..|.||      .:..|.||.          |:...|.|.|||.|.|.:::.|.
Mouse  2920 QWSHPPPVCKVVNCSDP------GIPANSKRESKIEHGNFTYGTVVFYDCNPGYFLFGSSVLICQ 2978

  Fly   567 LGGEWSSKTPSCRFVDCGAPARPNRGIAILLNGTTTVNSVVKYECDEDHWLDGQSELYCTREGKW 631
            ..|:|....|.|..:|||.|..|..  |:|.....|..|.|.|.|.....|.||:...|...|.|
Mouse  2979 PNGQWDKPLPECIMIDCGHPGIPPN--AVLSGEKYTFGSTVHYSCTGKRSLLGQASRTCQLNGHW 3041

  Fly   632 SGEAPVCE---LVTCETPSVPSGSFVIGYDYNVHSKIQYNCDPGHIMHGTPVLECLDSGEWSADA 693
            ||..|.|.   ..||..|..|........|:...|.:::.||.|:|::|:....||.:|.|:...
Mouse  3042 SGSQPHCSGDTTGTCGDPGTPGHGSRQESDFRTKSTVRFACDTGYILYGSEERTCLSNGSWTGRQ 3106

  Fly   694 PYCEYIDCGTILPIPYGSHKYVTNTTYVGSEVVFSCSQSHKLSGVLKRTCLESAVWSDASPKCEE 758
            |.|:.:.||.......|....:..||: .|.|::||.:.:.|||...|.|..:..||.:.|.|..
Mouse  3107 PECKAVQCGNPGTTANGKVFRIDGTTF-SSSVIYSCLEGYILSGPSVRQCTANGTWSGSLPNCTI 3170

  Fly   759 IRCPEPKLAAHSLLSVTGNDRMYGRTL---------IRTSESSQNTAQT---------------- 798
            |.|.:|.:.|:.|.  .|:|.:.|:.:         |..:.|...|..|                
Mouse  3171 ISCGDPGIPANGLR--YGDDFVVGQNVSYMCQPGYTIELNGSRVRTCTTNGTWSGVMPTCRAVTC 3233

  Fly   799 ---------------YKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAP---- 844
                           :..|....|.|..||::...|:.||..:|.|||.:|:|:...||.|    
Mouse  3234 STPPQISNGRLEGTNFDWGFSISYICSAGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPS 3298

  Fly   845 EGINNGKVVLATNATYYGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEAPECVE---VVCDTPNI 906
            :|...||..:      |.:.|.:.||..|.|.|.|.|||...|.||..:|.|:|   ..|:.|.:
Mouse  3299 QGKREGKSFI------YQSEVSFSCNSPFILVGSSTRLCQTDGTWSGSSPHCIEPTRTSCENPGV 3357

  Fly   907 NENLIVEAGPR----------AVGSVATFKCAKGRIMMGNDTRVCQKNGKWTGKSPTCRPVDCGR 961
                     ||          .||||..|.|.||.::.|:.||.|..:..|:|..|.|.|..|.:
Mouse  3358 ---------PRHGSQNNTFGFQVGSVVQFHCKKGHLLQGSTTRTCLPDLTWSGIQPECIPHSCKQ 3413

  Fly   962 PLAIENGRVIVVNDSTLYGGSAEYHCIPNYNRI-GQYLRKCTEDGAWSGKQPRCELAT------- 1018
            |.:..:..|:.: |...:|.:..|.|.|.:... |...|.|..|..|:||.|.||..:       
Mouse  3414 PESPAHANVVGM-DLPSHGYTLIYTCQPGFFLAGGTEHRVCRSDNTWTGKVPVCEAGSKILVKDP 3477

  Fly  1019 --AEGQETSELGTGVGIGATVIVALLVIFGLIFL----YRNKARPVKNTENVQAAETKDERNAAV 1077
              |.|..:.:|.....           :|...::    |..|.|....|..|.:......|..|.
Mouse  3478 RPALGTPSPKLSVPDD-----------VFAQNYIWKGSYNFKGRKQPMTLTVTSFNASTGRVNAT 3531

  Fly  1078 MS-----------YSTLEANNRMH---------------------MDN----NPSATFNTFHGGA 1106
            :|           |.:.||...:|                     ||.    .|......|.|..
Mouse  3532 LSNSDMELLLSGVYKSQEARLMLHIYLIKVPAHASVKKMKEENWAMDGFVSAEPDGATYVFQGFI 3596

  Fly  1107 GGRSNG-------GGNPDANSNGERLNNNRSEN---------------------IYDQ--IPNEQ 1141
            .|:..|       |.|....||.....:..:.:                     :|.|  .|..|
Mouse  3597 KGKDYGQFGLQRLGLNTSEGSNSSNQPHGTNSSSVAIAILVPFFALIFAGFGFYLYKQRTAPKTQ 3661

  Fly  1142 FYD-APYEMRTNDEVYEPEPVASNVITINGISVR 1174
            :.. :.:|.......:|.....:|..::.|.:||
Mouse  3662 YTGCSVHENNNGQAAFENPMYDTNAKSVEGKAVR 3695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_511136.2 CCP 58..112 CDD:153056 16/56 (29%)
FTP 113..261 CDD:128870 33/185 (18%)
CLECT 281..403 CDD:153057 37/192 (19%)
PHA02927 <408..578 CDD:222943 58/185 (31%)
PHA02927 <508..696 CDD:222943 64/201 (32%)
PHA02639 643..>837 CDD:165022 59/233 (25%)
PHA02927 798..1014 CDD:222943 75/264 (28%)
Csmd3NP_001074860.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
CUB 65..171 CDD:238001
CCP 178..236 CDD:153056
CUB 241..343 CDD:238001
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..437
CCP 486..544 CDD:153056
CUB 548..656 CDD:238001
CCP 664..718 CDD:153056
CUB 721..828 CDD:238001
CCP 834..891 CDD:153056
CUB 895..1002 CDD:238001
CCP 1010..1063 CDD:153056
CUB 1067..1175 CDD:238001
CCP 1182..1238 CDD:153056
CUB 1241..1348 CDD:238001
CCP 1354..1411 CDD:153056
CUB 1414..1522 CDD:238001
CCP 1528..1585 CDD:153056
CUB 1588..1695 CDD:238001
CCP 1701..1758 CDD:153056
CUB 1762..1869 CDD:238001
CCP 1878..1936 CDD:153056
CUB 1939..2046 CDD:238001
CCP 2052..2107 CDD:153056
CUB 2111..2218 CDD:238001
CCP 2224..2280 CDD:153056
CUB 2283..2389 CDD:238001
CCP 2395..2453 CDD:153056 16/57 (28%)
CUB 2460..2566 CDD:238001 21/122 (17%)
CCP 2569..2628 CDD:153056 16/87 (18%)
PHA02927 2627..2871 CDD:222943 53/244 (22%)
PHA02927 2756..2991 CDD:222943 66/247 (27%)
PHA02927 2927..3168 CDD:222943 77/249 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3052..3071 4/18 (22%)
PHA02927 3168..3407 CDD:222943 69/255 (27%)
CCP 3411..3467 CDD:153056 16/56 (29%)
Blue background indicates that the domain is not in the aligned region.

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