DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fw and Pamr1

DIOPT Version :10

Sequence 1:NP_511136.2 Gene:fw / 32162 FlyBaseID:FBgn0001083 Length:1174 Species:Drosophila melanogaster
Sequence 2:NP_776110.3 Gene:Pamr1 / 210622 MGIID:2445082 Length:720 Species:Mus musculus


Alignment Length:676 Identity:136/676 - (20%)
Similarity:209/676 - (30%) Gaps:253/676 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   493 SCHENYTLIGNENRTCAMDGWS--------GKQPECLVDWCPDPQPIAGGDV---RFNDKRAGST 546
            |....||:|   |..|....|:        ..|.|||   ||..:.:.|..:   |..|....|.
Mouse    21 SLPREYTVI---NEACPGAEWNIMCRECCEYDQIECL---CPGKKEVVGYTIPCCRNEDNECDSC 79

  Fly   547 ATYVCEPGYVLVGEAIISCGLGGEWSSKTPSCRFVDCGAPARPNRGIAILLNGTTTVNSVVKYEC 611
               :..||..:. |...|| ..|.|                          .||.          
Mouse    80 ---LIHPGCTIF-ENCKSC-RNGSW--------------------------GGTL---------- 103

  Fly   612 DEDHWLDGQSELYCT--REGKWSGEAPVCELVTCETPSVPSGSFVI-GYDYNVHSKIQYNCDPGH 673
             :|.::.|   .||.  |.|.:.|:...|..|.    ....|..:: .|..|.|.:...:..||.
Mouse   104 -DDFYVKG---FYCAECRAGWYGGDCMRCGQVL----RASKGQILLESYPLNAHCEWTIHARPGF 160

  Fly   674 IMHGTPVLECLDSGEWSADAPY-C--EYID---------------CGTILPIPYGSHKYVTNTTY 720
            |:.       |..|..|.:..| |  :|::               ||...|.|..|         
Mouse   161 IIQ-------LRFGMLSLEFDYMCQYDYVEVRDGDNSDSPIIKRFCGNERPAPIRS--------- 209

  Fly   721 VGS--EVVFSCSQSHKLSGVLKRTCLESAVWSDASPKCEEIRCPEPKLAAHSLLSVTGNDRMYGR 783
            .||  .|:|....|....|.  ....|......:||...:..|         ||..||       
Mouse   210 TGSSLHVLFHSDGSKNFDGF--HAVFEEITACSSSPCFHDGTC---------LLDTTG------- 256

  Fly   784 TLIRTSESSQNTAQTYKIGALAKYRCERGYKMVGEALATCTDSGQWSGTIPECVYVECGAPEG-- 846
                          ::|...||.|..:|...::.|  ..|:|.|              |...|  
Mouse   257 --------------SFKCACLAGYTGQRCENLLEE--RNCSDLG--------------GPVNGYK 291

  Fly   847 -INNGKVVLATNATYYGAAVLYECNVNFKLNGVSRRLCTEHGNWSHEAPECVEVVCDTPNINE-- 908
             |..|..:|.......|..|.:.||.::.|:|..:|.|.::|.||.:.|.|:: .|..|.|::  
Mouse   292 KITEGPGLLNERHVKIGTVVSFFCNGSYVLSGNEKRTCQQNGEWSGKQPVCMK-ACREPKISDLV 355

  Fly   909 -----NLIVEAGPRAVGSVATFKCAKGRIM----------------------------------- 933
                 ::.|::....:..:.:...:|.::.                                   
Mouse   356 RRRVLSMQVQSRETPLHQLYSTAFSKQKLQDASTKKPALPFGDLPPGYQHLHTQVQYECISPFYR 420

  Fly   934 -MGNDTRVCQKNGKWTGKSPTCRPVDCGR----PLAIENG-----------RVIVVNDSTLYGGS 982
             :|:..|.|.:.|||:|::|:|.|: ||:    |.....|           |...|:|..|:   
Mouse   421 RLGSSRRTCLRTGKWSGRAPSCIPI-CGKIESTPSPKTQGTRWPWQAAIYRRTSGVHDGGLH--- 481

  Fly   983 AEYHCIPNYNRIGQYLRKCTEDGAW----SGKQPRCELATAEGQETSELGTGVGIGATVI--VAL 1041
                                 .|||    ||...............:|||.     ||:|  ..|
Mouse   482 ---------------------KGAWFLVCSGALVNERTVVVAAHCVTELGK-----ATIIKTADL 520

  Fly  1042 LVIFGLIFLYRNKARPVKNTENVQAA 1067
            .|:.|.  .||:..|..|:.:|::.:
Mouse   521 KVVLGK--FYRDDDRDEKSIQNLRVS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwNP_511136.2 CCP 58..112 CDD:153056
FTP 113..261 CDD:128870
CLECT 281..403 CDD:153057
PHA02927 <408..578 CDD:222943 24/95 (25%)
PHA02927 <508..696 CDD:222943 41/202 (20%)
PHA02639 643..>837 CDD:165022 41/214 (19%)
PHA02927 798..1014 CDD:222943 55/280 (20%)
Pamr1NP_776110.3 CUB 128..234 CDD:238001 26/127 (20%)
EGF_CA 240..272 CDD:238011 12/61 (20%)
CCP 280..342 CDD:153056 20/75 (27%)
CCP <408..443 CDD:153056 8/34 (24%)
Tryp_SPc 461..718 CDD:238113 23/115 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.