DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gd and CG4998

DIOPT Version :9

Sequence 1:NP_001259479.1 Gene:gd / 32159 FlyBaseID:FBgn0000808 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001036609.1 Gene:CG4998 / 39808 FlyBaseID:FBgn0036612 Length:1185 Species:Drosophila melanogaster


Alignment Length:539 Identity:118/539 - (21%)
Similarity:171/539 - (31%) Gaps:188/539 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SPCPKVFQYRFDGSEWFGLMAVRSPD----GHQPLHIRVTLSMRGKPTTYTQNYLGEIELLTRGK 87
            ||....|...:.||         |||    |....|:..:.::.|..|....| .|.     |||
  Fly   788 SPYESSFNSIYPGS---------SPDFGGYGEYSQHVERSANVSGGDTDRPSN-SGR-----RGK 837

  Fly    88 FTHNAPVLYKIRFPKHHFPPKLLLMSANNHVICFGSGEHSIFMTQIQLEHIRKLSFIPDKKSSLL 152
            ..:..| ||.|..|                    ..||.:                    .|..:
  Fly   838 QLNLGP-LYNIPTP--------------------APGEAA--------------------GSDRI 861

  Fly   153 LDPEEEEVRKTDD-----KPPSTPHIQFKKKPFAQAPK--EICGRIDRDLDFHLSQRTESLHVAI 210
            ..|.:...|..:|     ..|......:..:|..:..:  |:|.|  |.|      |.::.....
  Fly   862 TFPRDRRRRSVEDGVWAGAAPKEQRAYYGNRPVEKTCRINEVCCR--RPL------RPQAPPQQF 918

  Fly   211 GE--PKSSDGIT----SPVFVDDDEDDVLEHQFVDESEAEAIESDSADSLPSITRGSWPWLAAIY 269
            |.  .:::.|||    :||:||.|.:                            .|.:||..||.
  Fly   919 GRCGVRNAAGITGRIKNPVYVDGDSE----------------------------FGEYPWHVAIL 955

  Fly   270 VNNLTSLDFQCGGSLVSARVVISSAHCFKLFNKRYTSNEVLVFLGRHNLKNWNEEGS------LA 328
            ..:.....:.|||:|:.|:.:||:|||.|..|.         |..|..|..|:....      :.
  Fly   956 KKDPKESIYACGGTLIDAQHIISAAHCIKSQNG---------FDLRVRLGEWDVNHDVEFFPYIE 1011

  Fly   329 APVDGIYIHPDFNSQLSSYDADIAVIILKDEVRF--NTFIRPACLWSGSSKTEYIVGERGIVIGW 391
            ..|..::|||::.:  .:.|.|:||:.|...|.|  |..|.||||   ..|.....|.|....||
  Fly  1012 RDVVSVHIHPEYYA--GTLDNDLAVLKLDQPVDFTKNPHISPACL---PDKYSDFTGARCWTTGW 1071

  Fly   392 SFDRTNRTRDQKLSSELPGKKSTDASAPKVVKAPIVGNAEC------------FRANAHFRSLSS 444
            ..|..             |:.....:..|.|..||:.:.:|            ::.|..|     
  Fly  1072 GKDAF-------------GEHGKYQNILKEVDVPILSHQQCESQLRNTRLGYSYKLNPGF----- 1118

  Fly   445 NRTFCAGIQAEERDTHQSGASIYTGISGAGLFIRRNNRWMLRGTVSAALPA--VETPDAESSHKL 507
               .|||  .||      |.....|..|..|...||....:.|.||..:..  |..|.       
  Fly  1119 ---VCAG--GEE------GKDACKGDGGGPLVCDRNGAMHVVGVVSWGIGCGQVNVPG------- 1165

  Fly   508 CCKNQYIIYADVAKFLDWI 526
                   :|..|:.:|.||
  Fly  1166 -------VYVKVSAYLPWI 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gdNP_001259479.1 GD_N 27..124 CDD:292649 22/100 (22%)
Tryp_SPc 257..526 CDD:238113 71/290 (24%)
Tryp_SPc 258..526 CDD:214473 71/289 (25%)
CG4998NP_001036609.1 Tryp_SPc 942..1180 CDD:238113 74/321 (23%)
Tryp_SPc 942..1177 CDD:214473 72/319 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447379
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24258
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.