DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gd and teq

DIOPT Version :9

Sequence 1:NP_001259479.1 Gene:gd / 32159 FlyBaseID:FBgn0000808 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_648288.2 Gene:teq / 39048 FlyBaseID:FBgn0023479 Length:2792 Species:Drosophila melanogaster


Alignment Length:433 Identity:97/433 - (22%)
Similarity:163/433 - (37%) Gaps:118/433 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 NHVICFGS------------GEHSIFMTQIQLEHIRKLSFIPDKKSSLLLDPEEEEVRKTDDKPP 168
            :.|:|||:            |||:...|                        |:..:..:...||
  Fly  2445 DQVMCFGNETSIDQCNHWNWGEHNCNHT------------------------EDVALHCSAGPPP 2485

  Fly   169 STPHIQFKKKPFAQAPKEICGRIDRDLDFHLSQRTESLHVAIGEPKSSDGITSP----VFVDDDE 229
                   :.:.::|.  :|.|  .|.|....:.:|.| .:.:.| :||..:.:|    :|.||..
  Fly  2486 -------RSQRYSQT--QIKG--GRSLGRETTPKTYS-QIGLWE-RSSKAVHTPRRCGIFKDDLT 2537

  Fly   230 DDVLEHQFVDESEAEAIESDSADSLPSITRGSWPWLAAIYVNNLTSLDFQ-CGGSLVSARVVISS 293
            |:....      |...:..:.|.      ||..||.|.|.......:... ||..::|.|.::::
  Fly  2538 DEYAHR------EERVVRGNVAQ------RGRHPWQATIRTRGRGGISSHWCGAVVISKRHLLTA 2590

  Fly   294 AHCFKLFNKRYTSNEVLVF--LGRHNLKNWNEEGSLAAPVDGIYIHPDFNSQLSSYDADIAVIIL 356
            |||.      |.|.:...|  :|.| ..|..|...:.:.::..|:|.:|... :..:.|||:::|
  Fly  2591 AHCL------YGSPKGAYFVRVGDH-YANIAESSEVDSFIENWYLHENFRKG-THMNNDIALVVL 2647

  Fly   357 KDEVRFNTFIRPACLWSGSSKTEYIVGERGIVI-GWSFDRTNRTRDQKLSSELPGKKSTDASAPK 420
            |..::|:.:::|.||   ..|...:|.:|...| ||              ..:....||.|....
  Fly  2648 KTPLKFSDYVQPICL---PDKNAELVEDRKCTISGW--------------GSIKSGVSTPAQVLG 2695

  Fly   421 VVKAPIVGNAECFRANAHFRSLSSNRTFCAGIQAEERDTHQSGASIYTGISGAGLFIRRNNRWML 485
            ..:.||:.:..|.::|. :.|..|...||||...|..|..:       |.||..|....::...|
  Fly  2696 SAELPILADHVCKQSNV-YGSAMSEGMFCAGSMDESVDACE-------GDSGGPLVCSDDDGETL 2752

  Fly   486 RGTVSAALPAVETPDAESSHKLCC--KNQYIIYADVAKFLDWI 526
            .|.:|           ...|   |  ||:..:|..|..::|||
  Fly  2753 YGLIS-----------WGQH---CGFKNRPGVYVRVNHYIDWI 2781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gdNP_001259479.1 GD_N 27..124 CDD:292649 4/19 (21%)
Tryp_SPc 257..526 CDD:238113 67/274 (24%)
Tryp_SPc 258..526 CDD:214473 67/273 (25%)
teqNP_648288.2 CBM_14 65..115 CDD:279884
ChtBD2 136..184 CDD:214696
ChtBD2 215..261 CDD:214696
ChtBD2 284..327 CDD:214696
CBM_14 521..569 CDD:279884
ChtBD2 608..654 CDD:214696
ChtBD2 709..752 CDD:214696
CBM_14 782..830 CDD:279884
ChtBD2 864..909 CDD:214696
CBM_14 942..993 CDD:279884
RCR <1051..1126 CDD:304939
RCR <1116..1210 CDD:304939
ChtBD2 1324..1369 CDD:214696
ChtBD2 1474..1518 CDD:214696
LDLa 2193..2222 CDD:238060
SR 2229..2331 CDD:214555
SRCR 2234..2332 CDD:278931
LDLa 2337..2370 CDD:197566
SR 2382..2480 CDD:214555 9/58 (16%)
SRCR 2386..2480 CDD:278931 9/58 (16%)
Tryp_SPc 2546..2781 CDD:214473 68/287 (24%)
Tryp_SPc 2547..2784 CDD:238113 70/288 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24258
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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