DRSC/TRiP Functional Genomics Resources

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Protein Alignment cac and prpf38a

DIOPT Version :9

Sequence 1:NP_001356945.1 Gene:cac / 32158 FlyBaseID:FBgn0263111 Length:2110 Species:Drosophila melanogaster
Sequence 2:NP_001017140.1 Gene:prpf38a / 549894 XenbaseID:XB-GENE-979997 Length:312 Species:Xenopus tropicalis


Alignment Length:225 Identity:58/225 - (25%)
Similarity:88/225 - (39%) Gaps:62/225 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1443 MELRETITNIWPLQAKKMLNLLVPPSDQLNKGKLSVGKIYAGFLILESWRSTRFGQLDSGMPMLE 1507
            |.:.|.|..:  |..:::.::::|             ::...|::.|:      .|||..:..||
 Frog   142 MHVDEFIDQL--LHEERVCDVILP-------------RLQKRFVLEET------EQLDPRVSALE 185

  Fly  1508 LQ----DASRHPSQESLTGADAGHLHPGHSY--MNGHRRSPSLRHNGSPLARSPSPRRRGHQYIH 1566
            ..    ::|.....|...|.|....|...:|  ::..|||||.|:..|   ||.|||||      
 Frog   186 EDMDDVESSEEEEDEDEKGRDPSPEHHRRNYRDLDRPRRSPSPRYRRS---RSRSPRRR------ 241

  Fly  1567 HDIGFSDTVSNVVEMVKETRHPRHGNSHPRYPRGSWSASTSPARSPSPSRYGGHLSRSKRTQLPY 1631
                              :|.|:..:..|  ||.....|.||.|..|.||...|.|:||.     
 Frog   242 ------------------SRSPKRRSPSP--PRRERHRSKSPRRHRSRSRERRHRSKSKS----- 281

  Fly  1632 PTYGTTSLCQRSRSPSPARLQEMRERDRLG 1661
            |.: ..|...||.|.||.|.::..::.|.|
 Frog   282 PGH-HRSHRHRSHSKSPERSKKSHKKSRRG 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cacNP_001356945.1 Ion_trans 37..324 CDD:334124
Ion_trans 441..677 CDD:334124
Ion_trans 769..1050 CDD:334124
Ion_trans 1094..1345 CDD:334124
GPHH 1346..1416 CDD:339854
Ca_chan_IQ 1418..1492 CDD:337190 7/48 (15%)
prpf38aNP_001017140.1 N-terminal protein interaction domain. /evidence=ECO:0000250|UniProtKB:Q8NAV1 1..179 9/57 (16%)
PRP38 10..172 CDD:367467 6/44 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..312 48/166 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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