Sequence 1: | NP_001356945.1 | Gene: | cac / 32158 | FlyBaseID: | FBgn0263111 | Length: | 2110 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_573462.2 | Gene: | Scn4a / 110880 | MGIID: | 98250 | Length: | 1841 | Species: | Mus musculus |
Alignment Length: | 1859 | Identity: | 472/1859 - (25%) |
---|---|---|---|
Similarity: | 823/1859 - (44%) | Gaps: | 407/1859 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 SLFILTEDNPIRKYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPGGDKTVLAQKLEKTEAYFL 81
Fly 82 CIFCVEASLKILALGLVLHKHSYLRNIWNIMDFFVVVTGFMTQYPQIGPEVDLRTLRAIRVLRPL 146
Fly 147 KLVSGIPSLQVVLKSIIKAMAPLLQIGLLVLFAIVIFAIIGLEFYSGALHKTCYSLEDP------ 205
Fly 206 ----------------------NKLVKEGES---------ETPCNTDN---ILEKATGSFVCNNT 236
Fly 237 TSM--------CLEKWEGPNSGITSFDNIGFAMLTVFQCITMEGWTAILYWTNDALGSAFNWIYF 293
Fly 294 VPLIVIGSFFMLNLVLGVLSGEFAKEREKVENRQEFLKLRRQQQLERELNGYVEWICKAEEVILA 358
Fly 359 EERTTEEEKMHIMEARRRNAAKRKKLKSLGKSKSTDTEE--EEAEED--YGDD--GYLKT---RS 414
Fly 415 KPQGSCTGFWRAEKRFRFWIR-----HTVKTQWFY--------------WF-------------- 446
Fly 447 ----VIVLVFLNTVCVAVEHYGQPSFLTEFLYYAEFIFLGLFMSEMFIKMYALGPRIYFESSFNR 507
Fly 508 FDCVVISGSIFEVIWSEVKGGSFGLSVLRALRLLRIFKVTKYWSSLRNLVISLLNSMRSIISLLF 572
Fly 573 LLFLFILIFALLGMQLFGGQF-----------NLPGGTPETNFNTFPIALLTVFQILTGEDWNEV 626
Fly 627 MYQGIISQGGAQKGMIYSIYFIVLVLFGNYTLLNVFLAIAVDNLANAQELTAAEEE------QVE 685
Fly 686 EDKEK----------------QLQELEKEMEALQADGVHVENGDGAVAPSKSKGKK--KEEEKKE 732
Fly 733 EEE--------VTEGPKPML----------PYSSMFI---------------------------- 751
Fly 752 -LSP--------------------------TNP-------------------------------- 757
Fly 758 --IRRGAHWVVNLPYFDFFIMVVISMSSIALAAEDPVRENSR-RNKILNYFDYAFTGVFTIEMLL 819
Fly 820 KIVDLGVILHPGSYLREFWNIMDAVVVICAAVSFGFDMSGSSAGQNLSTIKSLRVLRVLRPLKTI 884
Fly 885 KRVPKLKAVFDCVVNSLKNVVNILIVYILFQFIFSVIGVQLFNGKFFYCTDESKHTSAECQGSYF 949
Fly 950 KYEEDELLPKQELRVWKPRAFHYDNVAAAMLTLFAVQTGEGWPQVLQHSMAATYEDRGPIQNFRI 1014
Fly 1015 EMSIFYIVYFIVFPFFFVNIFVALIIITFQEQ----GEAELQDGEIDKNQKSCIDFTIGARPLER 1075
Fly 1076 YMPKNRNTFKYKVWRIVVSTPFEYFIMMLIVFNTLLLMMKYHNQGDMYEKSLKYINMGFTGMFSV 1140
Fly 1141 ETVLKIIGFGVKN-FFKDPWNIFDLITVLGSIV-----DALWMEFGSNSINVGFLRLFRAARLIK 1199
Fly 1200 LLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLGTVENSITRHNNFQSF 1264
Fly 1265 IQGVMLLFRCATGEAWPNIMLACLKG--KACDDDAEKAPGEY----CGS-TLAYAYFVSFIFFCS 1322
Fly 1323 FLMLNLFVAVIMDNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYTEMYDMLKNMDPPL 1386
Fly 1387 GFGNKCPNRLAYKKLIRMNMPLDDELRVQFTTTLFALIRENLSIKMRAPEEMDQADME-LRETIT 1450
Fly 1451 NIWPLQAKKMLNLLVPPSDQLNKGKLSVGKIYAGFLILESWRSTRFGQLDSGMPMLELQDA-SRH 1514
Fly 1515 PSQESLTGADAGHLHPGHSYMNGHRRSPSLRHNGSP----LARSPSPRRRGHQYIHHDIGFSDTV 1575
Fly 1576 SNVVEMVKETRHPRHGNSHPRYPRGSWSASTSPARSPSP 1614 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
cac | NP_001356945.1 | Ion_trans | 37..324 | CDD:334124 | 85/334 (25%) |
Ion_trans | 441..677 | CDD:334124 | 83/278 (30%) | ||
Ion_trans | 769..1050 | CDD:334124 | 91/285 (32%) | ||
Ion_trans | 1094..1345 | CDD:334124 | 81/263 (31%) | ||
GPHH | 1346..1416 | CDD:339854 | 18/69 (26%) | ||
Ca_chan_IQ | 1418..1492 | CDD:337190 | 16/74 (22%) | ||
Scn4a | NP_573462.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 32..63 | ||
I. /evidence=ECO:0000305 | 113..448 | 87/380 (23%) | |||
Ion_trans | 130..451 | CDD:395416 | 86/366 (23%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 484..522 | 13/41 (32%) | |||
II. /evidence=ECO:0000305 | 554..826 | 86/285 (30%) | |||
Ion_trans | 571..784 | CDD:395416 | 72/225 (32%) | ||
Na_trans_assoc | 810..1020 | CDD:399489 | 25/212 (12%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 854..896 | 10/44 (23%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 925..983 | 4/57 (7%) | |||
III. /evidence=ECO:0000305 | 1007..1320 | 96/321 (30%) | |||
Ion_trans | 1024..1298 | CDD:395416 | 90/281 (32%) | ||
Na_channel_gate | 1290..1342 | CDD:240441 | 9/52 (17%) | ||
Important for rapid channel inactivation. /evidence=ECO:0000250|UniProtKB:P15390 | 1304..1306 | 0/1 (0%) | |||
IV. /evidence=ECO:0000305 | 1329..1627 | 93/304 (31%) | |||
Ion_trans | 1347..1603 | CDD:395416 | 81/262 (31%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1776..1841 | 13/53 (25%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |