DRSC/TRiP Functional Genomics Resources

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Protein Alignment cac and srm

DIOPT Version :9

Sequence 1:NP_001356945.1 Gene:cac / 32158 FlyBaseID:FBgn0263111 Length:2110 Species:Drosophila melanogaster
Sequence 2:XP_002939455.1 Gene:srm / 100489759 XenbaseID:XB-GENE-993102 Length:300 Species:Xenopus tropicalis


Alignment Length:244 Identity:45/244 - (18%)
Similarity:77/244 - (31%) Gaps:93/244 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1441 ADME-------LRETITNIWPLQAK--KMLNLLVPPSDQLNKGKLSVGKIYAGFLILESW-RSTR 1495
            |:||       .||| .::||.||.  ::..:|........:..:...|.|...|:|:.. :.|.
 Frog     9 ANMEKPVQDGWFRET-CSLWPGQAMSLEVEEVLYHKQSSFQEILVFRSKTYGNVLVLDGLIQCTE 72

  Fly  1496 -----FGQLDSGMPMLE-----------------LQDASRHPSQES-----------------LT 1521
                 :.::.:.:|:..                 |::..:|||.||                 |.
 Frog    73 RDEFSYQEMIANLPLYSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEEVINVSKKYLP 137

  Fly  1522 GADAGH------LHPGHSY----MNGHRRSPSLRHNGSPLARSPSPRRRGH-------------- 1562
            |...|:      ||.|..:    .|.......:..:..|:..:.|..:..:              
 Frog   138 GMAIGYSSPKLTLHVGDGFQFMKQNQDAFDVIITDSSDPVGPAESLFKESYYQLMKTALREGGIL 202

  Fly  1563 ------QYIHHDI-----GFSDTVSNVVEMVKETRHPRHGNSHPRYPRG 1600
                  |::|.|:     .|..|:..|||....|        .|.||.|
 Frog   203 CCQGECQWLHLDLIKEMHQFCKTLFPVVEYAYCT--------IPTYPSG 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cacNP_001356945.1 Ion_trans 37..324 CDD:334124
Ion_trans 441..677 CDD:334124
Ion_trans 769..1050 CDD:334124
Ion_trans 1094..1345 CDD:334124
GPHH 1346..1416 CDD:339854
Ca_chan_IQ 1418..1492 CDD:337190 15/60 (25%)
srmXP_002939455.1 PLN02366 15..298 CDD:215208 42/238 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R175
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.930

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