DRSC/TRiP Functional Genomics Resources

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Protein Alignment cac and pkd1l2

DIOPT Version :9

Sequence 1:NP_001356945.1 Gene:cac / 32158 FlyBaseID:FBgn0263111 Length:2110 Species:Drosophila melanogaster
Sequence 2:XP_031756633.1 Gene:pkd1l2 / 100486136 XenbaseID:XB-GENE-968335 Length:2458 Species:Xenopus tropicalis


Alignment Length:638 Identity:121/638 - (18%)
Similarity:204/638 - (31%) Gaps:189/638 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 PLLQIGLLVLFAIVIFAIIGLEFYSGALHKTCYSLEDPNKLVKEGESETPCNTDNILEKATGSFV 232
            ||..:|....||:|:..:               ..||..:....|...||.:.:.:|.....|.:
 Frog  1874 PLKVLGFAAFFALVLKKV---------------EPEDEEETTINGNLSTPGDPNPLLGSRRDSNI 1923

  Fly   233 CNNTTSMCLEKWEGPNSGITSFDNIGFAMLTVF----QCITMEG--WTAIL----------YWTN 281
            ..          ..|.:.||...|.......||    :.:...|  |..:|          |:.|
 Frog  1924 YQ----------PPPPTDITKMKNNYMKEQKVFALIREILAYLGFLWMLLLVAYGQRDPNSYYLN 1978

  Fly   282 DALGSAFNWIYFVPLIVIGSFF------MLNLVLGVLSGEFAKEREKVENRQEFLKLRRQQQ--- 337
            ..:.|:|. ..|..|.....||      ::|.:.|...|.......|:.......::|.::.   
 Frog  1979 KHIESSFT-DGFEDLCSYQEFFTWANTTLINNLYGSHPGFITDGNSKLVGGARMRQIRIKKDSCP 2042

  Fly   338 ----LERELNGYVEWICKAEEVILAEERTTEEEKMHIMEARR----------RNAAKRKKLKSLG 388
                |:..::.     |:|...:.|||....:...:......          :|.:|.:...:.|
 Frog  2043 VASVLQSTIDN-----CRAPYSLDAEEMGHYDGSWNFSAITNATDVNSPWYYQNHSKLRGHPTWG 2102

  Fly   389 KSKSTDTEEEEAEEDYGDDGYLKTRSKP--------QGSCTGFWRAEKRFRFWIRHTVKTQWFYW 445
            |..:           |...||:......        |...:..|........::..||.......
 Frog  2103 KLAT-----------YRGGGYVADLGNERKYAHRVLQDLFSNIWLDSYTRAVFVEFTVYNANVNL 2156

  Fly   446 FVIVLVFLNTVCV----------AVEHYGQPSFLTEFLYYAEFIFLGLFMSEMFIKMYAL--GPR 498
            |.||.:...|..:          :|..|.....|..|:..||.|:.      :|:..|.:  |.|
 Frog  2157 FCIVKLMFETNALGTFFTRANLQSVRLYPFTDGLHIFVVAAEVIYF------LFVIYYMVVQGKR 2215

  Fly   499 I------YFESSFNRFD--CVVISGSIFEVIWSEVKGGSFGLSVLR------------------- 536
            :      ||.|.:|..:  .::||.|...|.   ||....|...||                   
 Frog  2216 MKAEKWGYFRSKWNLLELALIIISWSALSVY---VKRTILGTRDLRYYQEHKNEFVSFNETAAAD 2277

  Fly   537 -ALRLLRIFKV----TKYWSSLR-----NLVISLL----NSMRSIISLLFLLFLFILIFALLGMQ 587
             ||..|..|.|    .|.|..||     |::.:.|    ..:...|:::.::||...|...|   
 Frog  2278 AALGYLIAFLVLLSTIKLWHLLRLNPKLNMITATLRRAWGDISGFITVIVIMFLAYSIACNL--- 2339

  Fly   588 LFGGQFNLPGGTPETNFN---TFPIALLTVFQILTGEDWNEVMYQGIISQGGAQKGMIYSIYFIV 649
            :||.:.|    :.:|.|:   |.....|.:|......|:|.|:...::..               
 Frog  2340 IFGWKLN----SYKTVFDSAKTMVSLQLGIFNYEEVLDYNPVLGSFLVGS--------------- 2385

  Fly   650 LVLFGNYTLLNVFLAIAVDNLANAQELTAAEEEQVEEDKEKQLQELEKEMEAL 702
            .::|..:.:||:|:::.         |.|..|||    |..|..:.|:.:|.|
 Frog  2386 CIIFMTFVVLNLFISVI---------LVAFSEEQ----KHHQASDEEEIVELL 2425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cacNP_001356945.1 Ion_trans 37..324 CDD:334124 34/177 (19%)
Ion_trans 441..677 CDD:334124 59/291 (20%)
Ion_trans 769..1050 CDD:334124
Ion_trans 1094..1345 CDD:334124
GPHH 1346..1416 CDD:339854
Ca_chan_IQ 1418..1492 CDD:337190
pkd1l2XP_031756633.1 CLECT 22..147 CDD:214480
Gal_Lectin 163..243 CDD:396628
REJ <615..890 CDD:366875
GPS 1276..1314 CDD:396408
PLAT_polycystin 1385..1504 CDD:238850
PKD_channel 1988..2408 CDD:400395 87/475 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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