DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sclp and Sclp

DIOPT Version :10

Sequence 1:NP_001259475.1 Gene:Sclp / 32156 FlyBaseID:FBgn0030357 Length:339 Species:Drosophila melanogaster
Sequence 2:XP_312362.3 Gene:Sclp / 1273393 VectorBaseID:AGAMI1_005311 Length:243 Species:Anopheles gambiae


Alignment Length:257 Identity:132/257 - (51%)
Similarity:171/257 - (66%) Gaps:29/257 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRP---FGNDITNIPNGG-----NNGGNNGGNNGNNDPNDGNDNRNTNISSEDPSEESGLSDDPS 57
            |||   |||||||....|     ||..||||.||.|:.|:..|:                     
Mosquito     1 MRPPTHFGNDITNTEANGDDQQNNNNNNNGGGNGGNNNNNHADH--------------------- 44

  Fly    58 IPPHIARIGGIVTCPPIAGQGVIRVVQRCEDAKENHKLDLSSCELMQIPDAVYHLMRNTELITCN 122
            |...:.::|..:..|.:||:|:||||:||:|||||:.||||.|||:|:|||||||||:|||.||:
Mosquito    45 IVERLTQMGATINFPKVAGRGIIRVVERCDDAKENNNLDLSECELIQVPDAVYHLMRHTELKTCD 109

  Fly   123 LSGNVLKSVSPKFSQKFSTITDLNLSHNKLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQS 187
            ||.||:..:||||:.|||.|||||||||:::|||:|.|.|.:|..|:||:||||.||.||||:..
Mosquito   110 LSSNVITKISPKFAVKFSLITDLNLSHNQMARLPDELADLHSLEMLDISHNSFITLPAVVFKMPK 174

  Fly   188 LASLDAQNNAILEIDTDEAITSDNLALVDLRNNPLSRNCRRKLQSFKTPFHLEISKDVEDDW 249
            |..|.|.||||::||.||.|.||:|.|||||:|||:..|...|:.....|.:|:|:.|::||
Mosquito   175 LRELKANNNAIIDIDRDEIIASDSLELVDLRHNPLTPMCHDLLKHAVLSFRIELSERVKEDW 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SclpNP_001259475.1 LRR <93..>223 CDD:443914 84/129 (65%)
leucine-rich repeat 93..115 CDD:275380 16/21 (76%)
leucine-rich repeat 116..141 CDD:275380 15/24 (63%)
leucine-rich repeat 142..164 CDD:275380 15/21 (71%)
leucine-rich repeat 165..187 CDD:275380 14/21 (67%)
leucine-rich repeat 188..211 CDD:275380 13/22 (59%)
SclpXP_312362.3 LRR <82..>239 CDD:443914 97/156 (62%)
leucine-rich repeat 82..104 CDD:275380 16/21 (76%)
leucine-rich repeat 105..128 CDD:275378 17/22 (77%)
leucine-rich repeat 129..151 CDD:275378 15/21 (71%)
leucine-rich repeat 152..174 CDD:275378 10/21 (48%)
leucine-rich repeat 175..198 CDD:275378 13/22 (59%)
leucine-rich repeat 199..210 CDD:275378 5/10 (50%)

Return to query results.
Submit another query.