DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smyhc1 and zip

DIOPT Version :10

Sequence 1:NP_001018343.1 Gene:smyhc1 / 321552 ZFINID:ZDB-GENE-030131-271 Length:1938 Species:Danio rerio
Sequence 2:NP_523860.2 Gene:zip / 38001 FlyBaseID:FBgn0287873 Length:2056 Species:Drosophila melanogaster


Alignment Length:1947 Identity:746/1947 - (38%)
Similarity:1177/1947 - (60%) Gaps:60/1947 - (3%)


- Green bases have known domain annotations that are detailed below.


Zfish    34 KKECFVPDPEVEYVKASITSRDGDKVTVD-TEYGKTLTFKECDVHPQNPPKFDKIEDMAMFTFLH 97
            |:..:||.....:|.|||....||:|.|: .|.||.:.....|:...|||||||:||||..|.|:
  Fly    79 KRLVWVPHENQGFVAASIKREHGDEVEVELAETGKRVMILRDDIQKMNPPKFDKVEDMAELTCLN 143

Zfish    98 EPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDSSVVKAYRGKKRTEAPPHIFSISDNAY 162
            |.:||.|:|:||.:.:||||||||||.|||||.||:|...:::.|:|.||.|.|||:|:|:|:||
  Fly   144 EASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAY 208

Zfish   163 QYMLSDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVSGKKDAA------------------- 208
            :.||.|||:||:|.|||||||||.|||:|||:.|.:||...|...|                   
  Fly   209 RNMLGDREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPKGSGAVPHPAVLINFSVNTNKYIK 273

Zfish   209 -------------------------SEKKGTLEDQIIQANPALEAFGNAKTIRNDNSSRFGKFIR 248
                                     :.::|.||.|::||||.|||||||||::||||||||||||
  Fly   274 VKIMAQNQNQTIEVVNGLKMVEVNSNCQEGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 338

Zfish   249 IHFGVSGKLASADIETYLLEKSRVTYQLKAERDYHIFYQILSQKKPELLEMLLITNNPYDYSYIS 313
            |:|..||.::.|:||||||||||...|.|.||.:|||||:|:...||..|..:: ::...|:::|
  Fly   339 INFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFIL-DDVKSYAFLS 402

Zfish   314 QGETQVASIDDAEELIATDDAFDVLGFTQDEKSGIYKLTGAIMHFGNMKFKQKQREEQAEADGTE 378
            .|...|..:||..|..||..:.:::|.|.::.:.|:::..|::.||:|||:|::..:||......
  Fly   403 NGSLPVPGVDDYAEFQATVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNT 467

Zfish   379 DADKVAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQNVQQVYYSIGALAKSVYEKMFLWMVVRIN 443
            .|.|:|:|:||:..|:.:....||:|||.::|||.|..:||.:::.|:||:.||:||.|:|.|||
  Fly   468 VAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFVTKAQTKEQVEFAVEAIAKACYERMFKWLVNRIN 532

Zfish   444 QSLD-TKQPRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIDW 507
            :||| ||:....|||:||:||||||:.|:|||||||:|||||||.|||.||:||||||::|||:|
  Fly   533 RSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 597

Zfish   508 EFIDFGMDLQACIELIEKPMGIMSILEEECMFPKASDQTFKAKLYDNHLGKNPTFQKPRIVKGRP 572
            :|||||:|||..|:||:||.|||::|:|||.||||:|:||..||...| ..:|.|.|...   |.
  Fly   598 KFIDFGLDLQPTIDLIDKPGGIMALLDEECWFPKATDKTFVDKLVSAH-SMHPKFMKTDF---RG 658

Zfish   573 EAHFALVHYAGTVDYNISNWLVKNKDPLNETVVGLFQKSTVKLLSFLFAGYSGADSAQDS-KGGK 636
            .|.||:|||||.|||:.:.||:||.|||||.:|.|.|.|....:..::........||.: ...:
  Fly   659 VADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWKDAEIVGMAQQALTDTQ 723

Zfish   637 GGGKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMENPLVMHQLRCNGVL 701
            .|.:.:...|:|||.|::|.|.|||..||:|:|:||||:|||..|..|.::.|||:.||||||||
  Fly   724 FGARTRKGMFRTVSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVL 788

Zfish   702 EGIRICRKGFPNRILYGDFKQRYRILNPSANPEGQFIDNKKAAEKLLGSLDIDHNQYKLGHTKVF 766
            |||||||:||||||.:.:|:|||.:|.|:..|:| |:|.|||.||::.:|::|.|.|::|.:|:|
  Fly   789 EGIRICRQGFPNRIPFQEFRQRYELLTPNVIPKG-FMDGKKACEKMIQALELDSNLYRVGQSKIF 852

Zfish   767 FKAGLLGTLEEMRDDRLALIITGIQARARGILSRLEFQKIVERRDSLLVIQWNVRAFMGVKNWPW 831
            |:||:|..|||.||.:::.:|...||..||.|:|..:||.:::.:::.:||.|..|::.::||.|
  Fly   853 FRAGVLAHLEEERDFKISDLIVNFQAFCRGFLARRNYQKRLQQLNAIRIIQRNCAAYLKLRNWQW 917

Zfish   832 MKLYFKIKPLLKTAETEKEMANMKEEFTKLKEAYAKSEARKKELEEKMVSLLQEKNDLQLAVQSE 896
            .:||.|:||||:..:.|:::...::|..:::|.........:|.|.|....|.||..|...:|:|
  Fly   918 WRLYTKVKPLLEVTKQEEKLVQKEDELKQVREKLDTLAKNTQEYERKYQQALVEKTTLAEQLQAE 982

Zfish   897 QDNLVDAEERCEGLIKSKIQLEAKAKELTERLEDEEEMNAELVAKKRKLEDECSELKKDIDDLEL 961
            .:...:|||....|:..|.:||...:||..|:|:|||....|..:|:|||....:|::.:::.|.
  Fly   983 IELCAEAEESRSRLMARKQELEDMMQELETRIEEEEERVLALGGEKKKLELNIQDLEEQLEEEEA 1047

Zfish   962 TLAKVEKEKHATENKVKNLTEEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAK 1026
            ...|::.||...:.|:|...|::|..|:...||.||||.|:|........|..||:|...|.|.|
  Fly  1048 ARQKLQLEKVQLDAKIKKYEEDLALTDDQNQKLLKEKKLLEERANDLSQTLAEEEEKAKHLAKLK 1112

Zfish  1027 AKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLTQESIMDLENDKQQMEEKLKKKDFEISQ 1091
            ||.|..:.:||..|.::::.|.:.:|:|||:|.::...:|.:.:......:|:.:|.|::.|::|
  Fly  1113 AKHEATISELEERLHKDQQQRQESDRSKRKIETEVADLKEQLNERRVQVDEMQAQLAKREEELTQ 1177

Zfish  1092 LNSKIEDEQALGAQLQKKLKELQARIEELEEELEAERAARAKVEKQRADLSRELEEISERLEEAG 1156
            ...:|::|.|..|..||..:||::::.|::|:||||:|||||.||.|.|||.|||.:...|.::.
  Fly  1178 TLLRIDEESATKATAQKAQRELESQLAEIQEDLEAEKAARAKAEKVRRDLSEELEALKNELLDSL 1242

Zfish  1157 GATAAQIEMNKKREAEFQKLRRDLEEATLQHEATAATLRKKHADSVADLGEQIDNLQRVKQKLEK 1221
            ..||||.|:..|||.|...|::.|||.|:.||...|.:|.||:..:..:.:|::||::.|..|||
  Fly  1243 DTTAAQQELRSKREQELATLKKSLEEETVNHEGVLADMRHKHSQELNSINDQLENLRKAKTVLEK 1307

Zfish  1222 EKSELKLELDDVVSNMEQIVKSKSNLEKMCRTLEDQMSEYRTKAEEGQRTINDFTMQKAKLQTEN 1286
            .|..|:.|..|:.:.:..:..|:...::..:..|.|::|.:.|..|.:|..::...:..|||.|.
  Fly  1308 AKGTLEAENADLATELRSVNSSRQENDRRRKQAESQIAELQVKLAEIERARSELQEKCTKLQQEA 1372

Zfish  1287 GELSRQLEEKDSLVSQLTRGKQSYTQQIEDLKRQLEEEVKAKNALAHAVQSARHDSDLLREQFEE 1351
            ..::.||||.:...|...:...:...|:.:.::.||||.:.|..|:..::....:.:.|:||.||
  Fly  1373 ENITNQLEEAELKASAAVKSASNMESQLTEAQQLLEEETRQKLGLSSKLRQIESEKEALQEQLEE 1437

Zfish  1352 EQEAKAELQRSLSKTNSEVAQWRTKYETDAIQRTEELEDAKKKLAQRLQEAEEAVEAVNAKCSSL 1416
            :.|||...:|.|::..:::.:.:.|.|.|| ...:|||:.||:|.:.::..|..|:.:.|:...|
  Fly  1438 DDEAKRNYERKLAEVTTQMQEIKKKAEEDA-DLAKELEEGKKRLNKDIEALERQVKELIAQNDRL 1501

Zfish  1417 EKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKVLAEWKQKYEESQTELESAQKESRSLST 1481
            :|:|.::|:|:||..:::|........|:|||:||||:|||.|...|:...|.::|::|:|...|
  Fly  1502 DKSKKKIQSELEDATIELEAQRTKVLELEKKQKNFDKILAEEKAISEQIAQERDTAEREAREKET 1566

Zfish  1482 ELFKLKNSYEEVLDQLETMKRENKNLQEEISDLTEQLGETGKSIHELEKIRKQLEQEKAEIQTAL 1546
            ::..:....:|..|::|.::.:.|.||.|:.||....|...|::|||||.::.||.:.||::...
  Fly  1567 KVLSVSRELDEAFDKIEDLENKRKTLQNELDDLANTQGTADKNVHELEKAKRALESQLAELKAQN 1631

Zfish  1547 EEAEGSLEHEEGKILRAQLEFNQVKADIERKLSEKDEEMEQAKRNQQRVVDTLQSSLESETRSRN 1611
            ||.|..|:..|...||.::....:::..||.|..|:|..|:.:|...:.:..|::.|:.|.:.|.
  Fly  1632 EELEDDLQLTEDAKLRLEVNMQALRSQFERDLLAKEEGAEEKRRGLVKQLRDLETELDEERKQRT 1696

Zfish  1612 EALRLKKKMEGDLNEMEIQLSQANRQASEAQKQLKGLHGHVKDSQMQLDDALRGNDDLKENIAIV 1676
            .|:..|||:||||.|:|..:...|:...:|.|..|.|...|||:....::|....::|:......
  Fly  1697 AAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAKAAKEELQALSKEA 1761

Zfish  1677 ERRNNLLQAELDELRSLVEQTERGRKLAEQELMDVSERVQLLHAQNTSLLNQKKKLEGDNTQLQT 1741
            ||:...|:||:.:|...:..:||.|:.||.|..:::|.:.....:.:.::::|::||.....|:.
  Fly  1762 ERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGSLMIDEKRRLEARIATLEE 1826

Zfish  1742 EVEEAVQECRNAE---EKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAE 1803
            |:||   |..|:|   ::::||......:..||..|:..|...|..:..:|:..|:|:.:|.|.|
  Fly  1827 ELEE---EQSNSEVLLDRSRKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIE 1888

Zfish  1804 QIAMKGGKKQVQKLEARVRELENEVELEQRKASESVKGVRKYERRIKELTYQTEEDRKNLARLQD 1868
            .......|..:..|||::..||.::|.|.::.....|..||.:::|||||...|::|:::.:.::
  Fly  1889 TAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKE 1953

Zfish  1869 LVDKLQLKVKSYKRAAEEAEEQANSNLGKFRKLQHELDEAEERADIAESQVNKMRAKSRDSG 1930
            .:|||..::|..||..:|.||:......:.||.|.|.::..|..:....::|.::.|.|.:|
  Fly  1954 QMDKLNSRIKLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTG 2015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smyhc1NP_001018343.1 Myosin_N 32..76 CDD:460670 14/42 (33%)
MYSc_class_II 99..768 CDD:276951 349/714 (49%)
Myosin_tail_1 848..1925 CDD:460256 333/1079 (31%)
zipNP_523860.2 Myosin_N 79..122 CDD:460670 14/42 (33%)
MYSc_Myh2_insects_mollusks 145..854 CDD:276876 349/714 (49%)
Myosin_tail_1 931..2011 CDD:460256 333/1083 (31%)

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