Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006722277.1 | Gene: | HELZ / 9931 | HGNCID: | 16878 | Length: | 1970 | Species: | Homo sapiens |
Alignment Length: | 1280 | Identity: | 263/1280 - (20%) |
---|---|---|---|
Similarity: | 460/1280 - (35%) | Gaps: | 371/1280 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 116 NCRKWFCNGRGSTSG-SHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKAD 179
Fly 180 SVVVLLCRQPCAAQNSLKDM------------NWDQEQWKPLIADRCFLAWLVKQPSEQGQLRAR 232
Fly 233 QISAAQIN-KLEELWKENIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEK---TFGPLVRLEAEY 293
Fly 294 DQKLKESATQE-----------NIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGEL 347
Fly 348 YNPWSEIGHVIKVPDNFGDD--VGLELKSSTNA----PVK----CTSNFTVDFIWKCT------- 395
Fly 396 -SFDRMTRALC---------------KFAIDRNSVSNFIYS--RLLGHGRADSNDEVLFRGPQPK 442
Fly 443 LFSAPHL-------------PDLNRSQVYAV-----KHALQRPLSLIQGPPGTGKTVTSATIV-Y 488
Fly 489 QLVKLHGGTVLVCAPSNTAVD-QLTEKIH------RTNLKVVRVCAKSR--EAIDSPVSFLALHN 544
Fly 545 QIRNMETNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRV 609
Fly 610 KFTSILIDESMQSTEPECMVPVVLGAK--QLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672
Fly 673 GIRPFRLEV----QYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQG 733
Fly 734 QEEIAGSGTSFLNRTE----AANVEKITTRFLKAGIKPE--QIGIITPYEGQRAYLVQYMQYQGS 792
Fly 793 LHSRLYQEIEIASVDAFQGREKDIIIMSCVR---------------------SNERQGIGFLNDP 836
Fly 837 RRLNVALTRAKFGIIIVGNPKVLAK----QQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPK 897
Fly 898 KLVNSMNIGAHFMSTIIADAKEVMVPGSI-YDRSGGYGQGRQM--VGQSMNGGQ---YGGSG--- 953
Fly 954 -------G------------GPYGN-----SPLGYGTPSSNSMVGFGLGNGGNGAAGGNNNFGGA 994
Fly 995 GP-SWAAAH----------LHHDSIGYISN---EHGAAALGNMPVPVGMFMNMSNIPP----RFY 1041
Fly 1042 NQHQQAIMAVKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGKSRVTGGGTGGA 1106
Fly 1107 PLTQGSSVCNA-------------------APYSQ--------HPMPLSLQMTQPSGFAL----- 1139
Fly 1140 ---SQQPELSQDFGQI-SQMDGLLSQDVAFNASGERSLNQFSQPY 1180 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | 28/146 (19%) |
DNA2 | 122..897 | CDD:224037 | 191/902 (21%) | ||
Mis12 | 210..299 | CDD:283509 | 20/92 (22%) | ||
AAA_19 | 458..>515 | CDD:289986 | 24/63 (38%) | ||
AAA_12 | 661..857 | CDD:289832 | 54/226 (24%) | ||
HELZ | XP_006722277.1 | zf-CCCH | 181..205 | CDD:279036 | |
AAA_11 | 669..861 | CDD:289831 | 58/218 (27%) | ||
P-loop_NTPase | 669..>766 | CDD:304359 | 31/96 (32%) | ||
DNA2 | <785..1099 | CDD:224037 | 82/352 (23%) | ||
UvrD_C_2 | 868..1079 | CDD:304668 | 54/225 (24%) | ||
PHA03160 | <1656..1815 | CDD:165431 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |