DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Upf1 and NAM7

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_013797.1 Gene:NAM7 / 855104 SGDID:S000004685 Length:971 Species:Saccharomyces cerevisiae


Alignment Length:918 Identity:465/918 - (50%)
Similarity:617/918 - (67%) Gaps:50/918 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 ITNDLADLQFEE---------EDDEPGSSYVKE------------LPPHACKYCGIHDPATVVMC 114
            |:|..:|:..:.         |||:..:...:|            ...::|.||||.....|:.|
Yeast    12 ISNSPSDVNVQPATQLNSTLVEDDDVDNQLFEEAQVTETGFRSPSASDNSCAYCGIDSAKCVIKC 76

  Fly   115 NNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKAD 179
            |:|:|||||.:..||.|||:||||.:.|..|:||.:..||:|:||||:||.:|||:|||:.||::
Yeast    77 NSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAKSE 141

  Fly   180 SVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEE 244
            :|||||||.|||   ..|:.|||.:||:|||.||..|:|:.:||:|:.:|:||.|:.:||:|||.
Yeast   142 AVVVLLCRIPCA---QTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEA 203

  Fly   245 LWKENIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVR 309
            .|:.|.:||..|::.|........:||||:|.|:|::::|||::|||:||::||||...|:|.|.
Yeast   204 KWRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVS 268

  Fly   310 WDVGLNKKTIAYFTLAKTDS-DMKLMHGDELRLHYVGELYNPWSEIGHVIKVPDNFGDDVGLELK 373
            |.:.||.:.:|.|||:..:| ::|:..|||:.|.|.|..:..|...|:::::|::|.|...||||
Yeast   269 WSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELK 333

  Fly   374 -SSTNAPVKCTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFR 437
             |.|..|...|:.||.:||||.||:|||..||.|||||:.|:|.::|.::|||...|    :.|.
Yeast   334 PSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVD----ISFD 394

  Fly   438 GPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCA 502
            .|.||.||.|:...||.||..||.|.|||||||||||||||||||||||||.|.|:|...:||||
Yeast   395 VPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 459

  Fly   503 PSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGE 567
            |||.|||.|..|:....|||||:.|||||.::|.||.|||||.: ......|||.|.:||||.||
Yeast   460 PSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLV-GRGAKGELKNLLKLKDEVGE 523

  Fly   568 LSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVV 632
            ||::|.||:..|.|..|.::|..|||:|||||||||.||. .||.::|||||.|::||||::|:|
Yeast   524 LSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLD-TKFRTVLIDESTQASEPECLIPIV 587

  Fly   633 LGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFF 697
            .||||:||||||.|||||::.:|||.|||.|||||||:.||..|.||||||||:|.||:||||.|
Yeast   588 KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMF 652

  Fly   698 YEGSLQNGVCAEDRRL-KLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFL 761
            |||||||||..|.|.: ...||||....||.|....|:|||:.:|||||||.||.|.|:|.|:..
Yeast   653 YEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLF 717

  Fly   762 KAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNE 826
            :.|:||||||:||||||||||::||||..|||...||.::|:||||||||||||.||:||||:||
Yeast   718 RDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANE 782

  Fly   827 RQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLI 891
            :|.||||.|||||||.|||||:|::|:|||:.||:..||||||..::::..||||:|:||:...:
Yeast   783 QQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTV 847

  Fly   892 HFQKPKKLVNSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQSM--NGGQYGGSGG 954
            ...:|:.......:.|.|               ::....|.:.:.:....|||  ..||.|..|.
Yeast   848 QLVRPQPRKTERPMNAQF---------------NVESEMGDFPKFQDFDAQSMVSFSGQIGDFGN 897

  Fly   955 GPYGNSPL 962
            ....|:.|
Yeast   898 AFVDNTEL 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 80/150 (53%)
DNA2 122..897 CDD:224037 433/777 (56%)
Mis12 210..299 CDD:283509 39/88 (44%)
AAA_19 458..>515 CDD:289986 42/56 (75%)
AAA_12 661..857 CDD:289832 130/196 (66%)
NAM7NP_013797.1 DNA2 84..851 CDD:224037 433/775 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344991
Domainoid 1 1.000 266 1.000 Domainoid score I290
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2185
Inparanoid 1 1.050 894 1.000 Inparanoid score I43
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54950
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 1 1.000 - - oto100126
orthoMCL 1 0.900 - - OOG6_101981
Panther 1 1.100 - - LDO PTHR10887
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1079
SonicParanoid 1 1.000 - - X3712
TreeFam 1 0.960 - -
1514.790

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