DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Upf1 and SEN1

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_013534.3 Gene:SEN1 / 851150 SGDID:S000004422 Length:2231 Species:Saccharomyces cerevisiae


Alignment Length:837 Identity:235/837 - (28%)
Similarity:373/837 - (44%) Gaps:196/837 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 IADRCFLAWLVKQPSEQGQLRARQISAAQINKLEEL---WKENIEATFQDLEKPGIDSE------ 265
            :..|...|.|.||..|..:.|..    ..:|.|.|:   |.....:.:.|.|..|..|:      
Yeast  1088 VVKRQTAAELAKQELEHMRKRLN----VDMNPLYEIILQWDYTRNSEYPDDEPIGNYSDVKDFFN 1148

  Fly   266 -PAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVRWDVGLNKKTIA-----YFTL 324
             ||          .|:|...||:.||:.  |.|..|..:|:.:....:..|:..::     |.::
Yeast  1149 SPA----------DYQKVMKPLLLLESW--QGLCSSRDREDYKPFSIIVGNRTAVSDFYDVYASV 1201

  Fly   325 AK-TDSDMKLMHGDELRLHYVGELYNP--------WSEIGH-----VIKVPDNFGDDVGLELKSS 375
            || ...|..:...|.:.:.|:.: :.|        :.:..|     |..:.:..|.:|.:.|:..
Yeast  1202 AKQVIQDCGISESDLIVMAYLPD-FRPDKRLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIH 1265

  Fly   376 TNAPVKCTSNF-TVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGP 439
            .|   ...|.| |:.....|....:||      .|:|.      ||.|.|....|...::|...|
Yeast  1266 RN---HSFSKFLTLRSEIYCVKVMQMT------TIERE------YSTLEGLEYYDLVGQILQAKP 1315

  Fly   440 QP-------KLFSAPHLPDLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVTSATIV--------- 487
            .|       ::.:......||.||..|:.:::.:. .||||||||||||.|...|:         
Yeast  1316 SPPVNVDAAEIETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNA 1380

  Fly   488 -----------------YQLVKLHGGTVLVCAPSNTAVDQLTEKI---------HRTNLKVVRVC 526
                             .||:|..  .:|:|||||.|||::..::         |:...::||| 
Yeast  1381 SSSNVIKVPLEKNSSNTEQLLKKQ--KILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRV- 1442

  Fly   527 AKSREAIDSPVSFLALHNQI------RNME--TNSELK--------------------------- 556
            .:| :.::..:..|.|...:      ||.|  |:.||:                           
Yeast  1443 GRS-DVVNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESP 1506

  Fly   557 -----------KLQQLKDETGELS-SADEKR------YRNL---KRAAENQLLEAADVICCTCVG 600
                       |:::|.....||. ..||.|      |||.   :|.|:..:|..:|:||.|..|
Yeast  1507 MSTEDISKLQLKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSG 1571

  Fly   601 AGDGRLSR--VKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQ 663
            :....|:.  :||.:::|||:.|.||...::|:..|.|:.|:|||..||.|.|:...|:....:|
Yeast  1572 SAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQ 1636

  Fly   664 SLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAE--DRRLKLDFPWPQPERPM 726
            |||.|: .....|:.|:|||||||.:|:|||:.||:|.|::|...:  ::|     ||.|.| |:
Yeast  1637 SLFVRM-EKNSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKR-----PWHQLE-PL 1694

  Fly   727 ----FFLVTQGQEEIAGSGTSFLNRTE-AANVEKITTRFLKAGIKPE---QIGIITPYEGQRAYL 783
                ||.:..|::|......|:.|..| ...:|.:...|.|...|.:   :||||:||..|...:
Yeast  1695 APYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKM 1759

  Fly   784 -VQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNE-RQGIGFLNDPRRLNVALTRA 846
             .::.:|.|.:   :.:.|:..::|.|||:||:||::||||::: :..:|||.|.||:|||||||
Yeast  1760 RKEFARYFGGM---INKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRA 1821

  Fly   847 KFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLV---EGSL---NNLKESLIH-FQKP 896
            |..|.::|:.:.|||.:||..|:...|||..|.   .|.|   ||..:|::. |..|
Yeast  1822 KTSIWVLGHQRSLAKSKLWRDLIEDAKDRSCLAYACSGFLDPRNNRAQSILRKFNVP 1878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 11/41 (27%)
DNA2 122..897 CDD:224037 235/837 (28%)
Mis12 210..299 CDD:283509 25/98 (26%)
AAA_19 458..>515 CDD:289986 27/83 (33%)
AAA_12 661..857 CDD:289832 78/207 (38%)
SEN1NP_013534.3 SEN1_N 106..859 CDD:403815
DNA2 1006..1858 CDD:224037 228/815 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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