Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_013534.3 | Gene: | SEN1 / 851150 | SGDID: | S000004422 | Length: | 2231 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 837 | Identity: | 235/837 - (28%) |
---|---|---|---|
Similarity: | 373/837 - (44%) | Gaps: | 196/837 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 210 IADRCFLAWLVKQPSEQGQLRARQISAAQINKLEEL---WKENIEATFQDLEKPGIDSE------ 265
Fly 266 -PAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVRWDVGLNKKTIA-----YFTL 324
Fly 325 AK-TDSDMKLMHGDELRLHYVGELYNP--------WSEIGH-----VIKVPDNFGDDVGLELKSS 375
Fly 376 TNAPVKCTSNF-TVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGP 439
Fly 440 QP-------KLFSAPHLPDLNRSQVYAVKHALQRP-LSLIQGPPGTGKTVTSATIV--------- 487
Fly 488 -----------------YQLVKLHGGTVLVCAPSNTAVDQLTEKI---------HRTNLKVVRVC 526
Fly 527 AKSREAIDSPVSFLALHNQI------RNME--TNSELK--------------------------- 556
Fly 557 -----------KLQQLKDETGELS-SADEKR------YRNL---KRAAENQLLEAADVICCTCVG 600
Fly 601 AGDGRLSR--VKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQ 663
Fly 664 SLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAE--DRRLKLDFPWPQPERPM 726
Fly 727 ----FFLVTQGQEEIAGSGTSFLNRTE-AANVEKITTRFLKAGIKPE---QIGIITPYEGQRAYL 783
Fly 784 -VQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNE-RQGIGFLNDPRRLNVALTRA 846
Fly 847 KFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLV---EGSL---NNLKESLIH-FQKP 896 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | 11/41 (27%) |
DNA2 | 122..897 | CDD:224037 | 235/837 (28%) | ||
Mis12 | 210..299 | CDD:283509 | 25/98 (26%) | ||
AAA_19 | 458..>515 | CDD:289986 | 27/83 (33%) | ||
AAA_12 | 661..857 | CDD:289832 | 78/207 (38%) | ||
SEN1 | NP_013534.3 | SEN1_N | 106..859 | CDD:403815 | |
DNA2 | 1006..1858 | CDD:224037 | 228/815 (28%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000219 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |