DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Upf1 and AT1G16800

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_001322185.1 Gene:AT1G16800 / 838251 AraportID:AT1G16800 Length:2226 Species:Arabidopsis thaliana


Alignment Length:1228 Identity:276/1228 - (22%)
Similarity:434/1228 - (35%) Gaps:431/1228 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 APSSALS----FLDMDD----------NELLPGAD----TQPT------QYDYRDFTMPSTSQSQ 47
            |.|||:.    .|..||          :.|:|.|:    .:|.      |.:..|.|:..|.:..
plant   894 ACSSAVQAIRHVLSSDDVDIEQLAEQISRLVPKANEYQILKPVDVVGKLQDNMMDLTVDETEKES 958

  Fly    48 TQNDQLEIAQRCSAGDSHPRLASITN-----------------DLADLQFEEEDDEPGSS-YVKE 94
            .:|  |....:....|.:..|..|.|                 .|:.|...|.|....|| .|::
plant   959 LKN--LPSLHKSHQPDINKTLLPIKNISQISSLKKSTSSIDASKLSALVLSERDVTVSSSNIVRD 1021

  Fly    95 LPP-------------HACKYCGIHDPATVVMCNNCRKWF--CNGRGSTSGSH------------ 132
            ||.             .|.|...:.||.:..:..|.:|..  ...||::..:.            
plant  1022 LPTTNAEPSKAAGMSREAEKRQNVEDPVSSGIRPNLKKATDELGPRGTSKEAQKSAISNAKGMDL 1086

  Fly   133 --IINH---------LVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLC 186
              ::|.         |...|.:.:.|...||:                    :|.:.   |:.||
plant  1087 RKVVNETEVDPLDLALKSLKRQSLPLAKSGPI--------------------VPKRQ---VIQLC 1128

  Fly   187 RQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENIE 251
                      ..:|...::|               |..|.|..|.|.      .|||:.:::.::
plant  1129 ----------APVNKKSDRW---------------QRQEAGFKRFRP------PKLEDWFRKILQ 1162

  Fly   252 ATFQDLEKPGIDSEP----------AHVLLRYEDGYQYEKTFGPLV--RLEAEYDQKLKESATQE 304
            ..:..:  .|:.|..          ..|.:|:....||.:.|.|||  ..:|:.....:|.::.|
plant  1163 MDYYAI--VGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLE 1225

  Fly   305 NIE-----------------VRW----DVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELY 348
            .|.                 ||:    :.|.|.|:.       :::|:.|...:......||   
plant  1226 EIYYGVISVLSIERVDDFHFVRFMQDENDGSNSKSF-------SENDLVLFTKEHPENSNVG--- 1280

  Fly   349 NPWSEIGHVIKVPDNFGDD--------VGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRMTRALC 405
                 :..:.||.....||        |.|.|:::::...:...|......|..:....:|..:.
plant  1281 -----VNMMGKVEGREWDDKKRTSILNVRLYLQNASSRLNQARRNLLERSQWHASRILNITSQIR 1340

  Fly   406 KF----AIDRNSVSNFIYSRLLGHGRADSN--DEVLFRGPQPKLFSAPH------LPDLNRSQVY 458
            :|    .|....|...|.|.:     .|||  .||    .:..|.|.||      ....|.||:.
plant  1341 EFQALSCIKDIPVLPLILSPM-----NDSNYDSEV----KRSDLRSLPHSLQQILKSSFNESQLQ 1396

  Fly   459 AVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQLV------------------------- 491
            |:..|:..       .:||||||||||||.|...|:..|:                         
plant  1397 AISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAIISGLLASASHKTSDRGNSEPGHSSSTSRQG 1461

  Fly   492 --------------------------------KLHGGTVLVCAPSNTAVDQLTEKIHRTNL---- 520
                                            |...|.||:||.||.|||:|..:|....:    
plant  1462 MNPSVAVARAWQDAALAKQLNDNSETNRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRD 1526

  Fly   521 ------KVVRVC-------------------------------AKSREAIDSPVSFLALHNQIRN 548
                  .:|||.                               :||.:..||.....:...::.:
plant  1527 GKMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLEKVVD 1591

  Fly   549 METNSELKKL----------------QQLKDETGELSS--------------------------A 571
            ..|:.|.|:.                ...||:.|:|.|                          |
plant  1592 QITHFEAKRANINQESLDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQA 1656

  Fly   572 DEKR----YRNLKRAAENQLLEAADVICCTCVGAGDGRLSRV-----------------KFTSIL 615
            .|::    .|.||:.....:|:.|.::..|..|.| |.|..|                 .|.:::
plant  1657 QERKANYEMRTLKQKLRKSILKEAQIVVTTLSGCG-GDLYSVCAESLAAHKFGSPSEDNLFDAVV 1720

  Fly   616 IDESMQSTEPECMVPVVL----GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRP 676
            |||:.|:.||..::|:.|    |.| .|:|||..||...|:...|::.....|:||||...|...
plant  1721 IDEAAQALEPATLIPLQLLKSRGTK-CIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPI 1784

  Fly   677 FRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPER--P-MFFLVTQGQEEIA 738
            ..|..|||||||:.:|||..||:..|.|||....:    ..|:.:...  | :|:.:..|||..:
plant  1785 LMLTQQYRMHPEICRFPSMHFYDNKLLNGVDMSSK----SAPFHENHHLGPYVFYDIVDGQEHRS 1845

  Fly   739 GSGTSFLNRTEA-ANVEKITTRFLKAGIKPE----QIGIITPYEGQRAYLVQYMQYQGSLHSRLY 798
            |..:|..|..|| |.|:.:  ||.|.....|    :|||||||:.|.|.|  ..::.|:..:::.
plant  1846 GDSSSVCNEQEAEAAVQLL--RFFKKRYPSEFVAGRIGIITPYKRQLAVL--RSRFTGAFGAQVT 1906

  Fly   799 QEIEIASVDAFQGREKDIIIMSCVRSN-------ERQGIGFLNDPRRLNVALTRAKFGIIIVGNP 856
            .::|:.:||.|||:|.||:::|.||:.       .:..|||:.|.||:||||||||..:.::||.
plant  1907 ADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGNT 1971

  Fly   857 KVLAKQQLWNHLLNFYKDRKVLV----------------EGSLNNLKESLIHFQKPKK 898
            :.|.:...|..|:...|:|:|::                :....||.:   :|.||.|
plant  1972 RTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPK---NFPKPDK 2026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 28/175 (16%)
DNA2 122..897 CDD:224037 238/1053 (23%)
Mis12 210..299 CDD:283509 19/100 (19%)
AAA_19 458..>515 CDD:289986 29/120 (24%)
AAA_12 661..857 CDD:289832 79/210 (38%)
AT1G16800NP_001322185.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D62494at2759
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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