| Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_727386.1 | Gene: | CG2990 / 31934 | FlyBaseID: | FBgn0030170 | Length: | 1100 | Species: | Drosophila melanogaster |
| Alignment Length: | 844 | Identity: | 204/844 - (24%) |
|---|---|---|---|
| Similarity: | 349/844 - (41%) | Gaps: | 237/844 - (28%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 185 LCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEEL---- 245
Fly 246 -----------WKENIEATF--QDLEKPGIDSEPAHVLLRY------EDGYQYEKTFGPLVRLEA 291
Fly 292 EYDQK--------LKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLH------ 342
Fly 343 --YVGELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFD-RMTRAL 404
Fly 405 CK------FAIDRNSVSNFI------YSRLLGHGR--ADSNDEVLFRGPQ------PKLF---SA 446
Fly 447 PHLPDLNRSQVYAVKHALQRPLS-LIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQ 510
Fly 511 LTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKR 575
Fly 576 YRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLIL 640
Fly 641 VGDHCQLGPVVMCKKAARAGLSQSLFERL------VVLGIRPFRLEVQYRMHPELSQFPSNFFYE 699
Fly 700 GSLQNGVCAEDR----RLKLDF-----PWPQP-------------------ERPMFFL------- 729
Fly 730 ---------VTQGQEEI-----AGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR 780
Fly 781 AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSC----------VRSNERQGIGFLND 835
Fly 836 PRRLNVALTRAKFGIIIVGNPKVLAK----QQLWNHLLNFYKDRKVLVEGSL----NNLKESLI 891 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | 12/78 (15%) |
| DNA2 | 122..897 | CDD:224037 | 204/844 (24%) | ||
| Mis12 | 210..299 | CDD:283509 | 19/119 (16%) | ||
| AAA_19 | 458..>515 | CDD:289986 | 24/57 (42%) | ||
| AAA_12 | 661..857 | CDD:289832 | 68/260 (26%) | ||
| CG2990 | NP_727386.1 | Dna2 | 99..297 | CDD:285859 | |
| Cas4_I-A_I-B_I-C_I-D_II-B | <283..415 | CDD:294426 | 12/80 (15%) | ||
| TIGR00376 | 480..1069 | CDD:273041 | 172/668 (26%) | ||
| P-loop_NTPase | 636..859 | CDD:304359 | 78/265 (29%) | ||
| AAA_12 | 815..1055 | CDD:289832 | 68/259 (26%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C45438984 | |
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 1 | 1.100 | - | - | P | PTHR10887 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| 4 | 3.840 | |||||