Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_593080.1 | Gene: | upf1 / 2542327 | PomBaseID: | SPAC16C9.06c | Length: | 925 | Species: | Schizosaccharomyces pombe |
Alignment Length: | 889 | Identity: | 491/889 - (55%) |
---|---|---|---|
Similarity: | 632/889 - (71%) | Gaps: | 44/889 - (4%) |
- Green bases have known domain annotations that are detailed below.
Fly 73 NDLADL--------------QFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCNNCRKWFCN 123
Fly 124 GRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQ 188
Fly 189 PCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENIEAT 253
Fly 254 FQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVRWDVGLNKKT 318
Fly 319 IAYFTLAKTDS-DMKLMHGDELRLHYVGELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKC 382
Fly 383 TSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQ-PKLFSA 446
Fly 447 PHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHG------GTVLVCAPSN 505
Fly 506 TAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSS 570
Fly 571 ADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGA 635
Fly 636 KQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG 700
Fly 701 SLQNGVCAEDRRLK-LDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAG 764
Fly 765 IKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQG 829
Fly 830 IGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKE---SLI 891
Fly 892 HFQKPKKLVNSMNIGAHFMSTIIADAKEVMVPG-----SIYDRS 930 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | 86/150 (57%) |
DNA2 | 122..897 | CDD:224037 | 463/786 (59%) | ||
Mis12 | 210..299 | CDD:283509 | 38/88 (43%) | ||
AAA_19 | 458..>515 | CDD:289986 | 38/62 (61%) | ||
AAA_12 | 661..857 | CDD:289832 | 133/196 (68%) | ||
upf1 | NP_593080.1 | UPF1_Zn_bind | 44..193 | CDD:286500 | 86/148 (58%) |
DNA2 | 66..839 | CDD:224037 | 460/777 (59%) | ||
P-loop_NTPase | 392..>597 | CDD:304359 | 130/204 (64%) | ||
AAA_12 | 608..805 | CDD:289832 | 133/196 (68%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 282 | 1.000 | Domainoid score | I297 |
eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H2185 | |
Inparanoid | 1 | 1.050 | 930 | 1.000 | Inparanoid score | I45 |
OMA | 1 | 1.010 | - | - | QHG54950 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000219 | |
OrthoInspector | 1 | 1.000 | - | - | oto101860 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101981 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR10887 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1079 |
SonicParanoid | 1 | 1.000 | - | - | X3712 | |
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.860 |