DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Upf1 and upf1

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_593080.1 Gene:upf1 / 2542327 PomBaseID:SPAC16C9.06c Length:925 Species:Schizosaccharomyces pombe


Alignment Length:889 Identity:491/889 - (55%)
Similarity:632/889 - (71%) Gaps:44/889 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 NDLADL--------------QFEEEDDEPGSSYVKELPPHACKYCGIHDPATVVMCNNCRKWFCN 123
            ||::.|              ||||...|      |:.....|.||.|.:|.:::.|.:|.|||||
pombe     9 NDISSLVSSKNMTSENGLEHQFEELLVE------KQYSEEHCAYCHIKNPNSILKCLHCNKWFCN 67

  Fly   124 GRGSTSGSHIINHLVRAKHREVTLHGEGPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQ 188
            .||.:..||||:|||||:|::|.||....|.:|:||||:||.||||:||||||||.:||||||||
pombe    68 VRGKSGASHIISHLVRARHKQVALHSHSSLSDTVLECYNCGTRNVFLLGFIPAKAKTVVVLLCRQ 132

  Fly   189 PCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENIEAT 253
            |||..:..||||||..||:|:|:||.||.||:..|||:.|..|..|::.|:.:|||||:::..|.
pombe   133 PCARASIAKDMNWDLTQWQPIISDRQFLPWLITPPSEEEQKLAIPITSQQMVRLEELWRKDPNAN 197

  Fly   254 FQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENIEVRWDVGLNKKT 318
            .:||:||..|.....|.|||:|.:.|:....||::.||:||::||||.||:::.||||..:||:.
pombe   198 LEDLDKPIEDDSLPSVELRYKDAHAYQAVLSPLIQAEADYDKRLKESQTQKDVVVRWDQAINKRY 262

  Fly   319 IAYFTLAKTDS-DMKLMHGDELRLHYVGELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKC 382
            .|:|.|.|.:| :::|..|||::|.|.|||..|||..|:|||:|:|..|:||||||.|...|::|
pombe   263 TAWFLLPKLESGEIRLAIGDEMKLTYEGELRAPWSSTGYVIKIPNNVSDEVGLELKRSDKVPIEC 327

  Fly   383 TSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQ-PKLFSA 446
            |.||:||::||.||||||..||..||.|.:.:|:|:|.:||||....|     |..|: |...|.
pombe   328 THNFSVDYVWKSTSFDRMQTALRLFATDGSRLSSFLYHKLLGHDIPPS-----FLKPKLPSDLSV 387

  Fly   447 PHLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHG------GTVLVCAPSN 505
            |:||.||.||..||:..|.:||||||||||||||||||::||.|..:..      ..||||||||
pombe   388 PNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSN 452

  Fly   506 TAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSS 570
            .|||||.||||||.|:||||.|||||.|:|.||||:||.||:|.:.|.||::|.:|:.|..|||.
pombe   453 VAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSI 517

  Fly   571 ADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGA 635
            .|||:.|.|..|||.:||.||.|||||||||||.|:|:.||.|:||||:.|::|||||:|:||||
pombe   518 QDEKKLRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGA 582

  Fly   636 KQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG 700
            ||::|||||.|||||||.||.|.|.|||||||||::||..||||.|||||||.||:||||.||||
pombe   583 KQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEG 647

  Fly   701 SLQNGVCAEDRRLK-LDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAG 764
            :|||||...:|..: :||||.||:.|:.|....||||::.|||||||||||:..|||.|.||::.
pombe   648 TLQNGVTTSERIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSN 712

  Fly   765 IKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQG 829
            :.||||||:|||:|||:|:|||||..||:...||:.:|:||||||||||||.||:|||||:|.||
pombe   713 VLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQG 777

  Fly   830 IGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKE---SLI 891
            |||:||||||||||||||:|:|::||||||||..||.|.:...|::..||||:||:|::   :|.
pombe   778 IGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKFSLTLT 842

  Fly   892 HFQKPKKLVNSMNIGAHFMSTIIADAKEVMVPG-----SIYDRS 930
            ..|||:|....:|:....  :.|.:|...|:|.     ::|..|
pombe   843 PPQKPQKFKRDLNVQRSL--SPIQNAGSAMLPSFSNLPNLYSSS 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 86/150 (57%)
DNA2 122..897 CDD:224037 463/786 (59%)
Mis12 210..299 CDD:283509 38/88 (43%)
AAA_19 458..>515 CDD:289986 38/62 (61%)
AAA_12 661..857 CDD:289832 133/196 (68%)
upf1NP_593080.1 UPF1_Zn_bind 44..193 CDD:286500 86/148 (58%)
DNA2 66..839 CDD:224037 460/777 (59%)
P-loop_NTPase 392..>597 CDD:304359 130/204 (64%)
AAA_12 608..805 CDD:289832 133/196 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 282 1.000 Domainoid score I297
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2185
Inparanoid 1 1.050 930 1.000 Inparanoid score I45
OMA 1 1.010 - - QHG54950
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 1 1.000 - - oto101860
orthoMCL 1 0.900 - - OOG6_101981
Panther 1 1.100 - - LDO PTHR10887
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1079
SonicParanoid 1 1.000 - - X3712
TreeFam 1 0.960 - -
1413.860

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