DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Upf1 and Ighmbp2

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_033238.2 Gene:Ighmbp2 / 20589 MGIID:99954 Length:993 Species:Mus musculus


Alignment Length:760 Identity:220/760 - (28%)
Similarity:319/760 - (41%) Gaps:172/760 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 LEAEYDQKLKESAT-QENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNPWS 352
            ||.|.|.:::|..: ||:..:|   .|..:.:....| :..|....::|..|      ..:.| .
Mouse    17 LELERDAEVEERRSWQEHSSLR---ELQSRGVCLLKL-QVSSQRTGLYGQRL------VTFEP-R 70

  Fly   353 EIGHVIKVPDN---FGDDVGLELKSSTNAPVKCTSNFTVDFIWKCT------SFDRM-------- 400
            :.|..:.:|.|   .||.|||   ..||.    .|......:.:.|      :||..        
Mouse    71 KFGPAVVLPSNSFTSGDIVGL---YDTNE----NSQLATGVLTRITQKSVTVAFDESHDLQLNLD 128

  Fly   401 ---TRALCKFAIDRNSVSNFIYSRL---------LGHGRADSNDEVLFRG--PQPKLFSAP---H 448
               |..|.|.|   |.|:   |.||         ...|.|.|..::|...  |.|.:...|   :
Mouse   129 RENTYRLLKLA---NDVT---YKRLKKALMTLKKYHSGPASSLIDILLGSSTPSPAMEIPPLSFY 187

  Fly   449 LPDLNRSQVYAVKHAL-QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLT 512
            ...|:.||..||..|| |:.|::|.||||||||.|...|:.|.|| .|..||.|||||.|||.|.
Mouse   188 NTTLDLSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLV 251

  Fly   513 EKIHRTNLKVVRVCAKSR--EAIDSPVSFLALHNQIRNMETNSELK----------KLQQLKDET 565
            |::.....:::|:...:|  |::... |..|:..:..|.:..::::          |..|.|.|.
Mouse   252 ERLALCKKRILRLGHPARLLESVQHH-SLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREK 315

  Fly   566 GELSSADE---KRYRNLKRAAENQLLEAADVICCTCVGA-GDGRLSRVK---FTSILIDESMQST 623
            |...|..:   |..:..:.||..|.|.||||:..|..|| .||.|..:.   |..:::||..|:.
Mouse   316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQAL 380

  Fly   624 EPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-GIRPFR-LEVQYRMH 686
            |..|.:| :|.|.:.||.|||.||.|..:..:||.||||:||.|||... |....| |.||||||
Mouse   381 EASCWIP-LLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMH 444

  Fly   687 PELSQFPSNFFYEGSLQNGVCAEDRRLKLDFP----WPQPERPMFFLVTQG-------QEEIAGS 740
            ..:..:.|...|.|.|.:........|| |.|    ..:...|:..:.|.|       :|:....
Mouse   445 QAIMCWASEAMYHGQLTSHPSVAGHLLK-DLPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSK 508

  Fly   741 GTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIAS 805
            |    |..|...|.......:.||::...|.:|.||..|...|.|.:       |..:.|:||.|
Mouse   509 G----NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSL-------SNKHPELEIKS 562

  Fly   806 VDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLN 870
            ||.||||||:.::::.||||.:..:|||.:.||:|||:|||:..:.::.:          :|.:|
Mouse   563 VDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICD----------SHTVN 617

  Fly   871 FYKDRKVLVE-----GSLNNLKESLI--------------HFQKPKKLVNSMNI----------- 905
            .:...|.||:     |.:....|.|.              |.:.||....|.:|           
Mouse   618 NHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSQGHSRVPKPKCPSTSIRKPASDQESGQ 682

  Fly   906 ------------------GAHFMSTIIADAKEVMVPGSIYDRSGG 932
                              |:|..|...:.|.     ||  ||:||
Mouse   683 ETRAAPRHGRRKPSEKPPGSHVQSQHSSSAN-----GS--DRTGG 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500
DNA2 122..897 CDD:224037 206/694 (30%)
Mis12 210..299 CDD:283509 4/9 (44%)
AAA_19 458..>515 CDD:289986 33/57 (58%)
AAA_12 661..857 CDD:289832 69/208 (33%)
Ighmbp2NP_033238.2 TIGR00376 19..640 CDD:273041 201/669 (30%)
AAA_19 197..255 CDD:289986 33/58 (57%)
AAA_12 417..613 CDD:289832 69/217 (32%)
SS DNA-binding. /evidence=ECO:0000250 637..783 17/91 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 650..723 15/78 (19%)
R3H_Smubp-2_like 724..782 CDD:100070
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 765..815
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 837..872
Nuclear localization signal. /evidence=ECO:0000255 862..866
ZnF_AN1 895..935 CDD:197545
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 953..993
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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