Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_506213.2 | Gene: | C44H9.4 / 179760 | WormBaseID: | WBGene00008099 | Length: | 1099 | Species: | Caenorhabditis elegans |
Alignment Length: | 660 | Identity: | 158/660 - (23%) |
---|---|---|---|
Similarity: | 260/660 - (39%) | Gaps: | 139/660 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 385 NF-TVDFIWKCTSFDRMTRALCKFAIDRNSVSN--FIYSRLLGHGRADSNDEVLFRGPQPKLFSA 446
Fly 447 P-HLP-DLNRSQVYAVKHALQR-PLSLIQGPPGTGKTVTSATIVYQLVKLH------GGTVLVCA 502
Fly 503 PSNTAVDQLTE---KIHR-TNLKVVRVCAK---------SREAIDSPVSFLALHNQIRNMETNSE 554
Fly 555 LKK------LQQLKDETGELSS----------ADEKR-YRN-LKRAAENQ-----------LLEA 590
Fly 591 ADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLI------------LVGD 643
Fly 644 HCQLGPVVMC--------------KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPS 694
Fly 695 NFFYEGSLQNGVCAEDR----RLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEK 755
Fly 756 ITTRFLKA----GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDI 816
Fly 817 IIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE- 880
Fly 881 ---GSLNNLKESLIHF----QKPKKLVNSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQ 938
Fly 939 MVGQSMNGGQ 948 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | |
DNA2 | 122..897 | CDD:224037 | 147/607 (24%) | ||
Mis12 | 210..299 | CDD:283509 | |||
AAA_19 | 458..>515 | CDD:289986 | 19/66 (29%) | ||
AAA_12 | 661..857 | CDD:289832 | 57/203 (28%) | ||
C44H9.4 | NP_506213.2 | AAA_11 | 539..786 | CDD:289831 | 60/260 (23%) |
UvrD_C_2 | 823..988 | CDD:304668 | 53/179 (30%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |