DRSC/TRiP Functional Genomics Resources

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Protein Alignment Upf1 and C44H9.4

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_506213.2 Gene:C44H9.4 / 179760 WormBaseID:WBGene00008099 Length:1099 Species:Caenorhabditis elegans


Alignment Length:660 Identity:158/660 - (23%)
Similarity:260/660 - (39%) Gaps:139/660 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 NF-TVDFIWKCTSFDRMTRALCKFAIDRNSVSN--FIYSRLLGHGRADSNDEVLFRGPQPKLFSA 446
            || |..:|...:.|....|..|:|....:..||  .|.:.|.|....:|...:.:.    |.|..
 Worm   472 NFQTGTWIVSQSQFLETPRLDCEFLQKMSPSSNGRRIVTALYGGSPINSTGNINWN----KQFEF 532

  Fly   447 P-HLP-DLNRSQVYAVKHALQR-PLSLIQGPPGTGKTVTSATIVYQLVKLH------GGTVLVCA 502
            | .:| .||:.|...|...|.. ||.|...|.|.||::|..|...:|.|.:      ....|:..
 Worm   533 PSKIPIGLNQYQNQYVSMILSGVPLILGNSPFGCGKSMTIVTAAVELQKKYMRSESFNKQQLLVT 597

  Fly   503 PSNTAVDQLTE---KIHR-TNLKVVRVCAK---------SREAIDSPVSFLALHNQIRNMETNSE 554
            .||.|...|.|   |:|: .:::.:|..::         |:..:|.|:   .:.::.....||:|
 Worm   598 QSNNAGVNLIEFALKLHKCDHIRFLRYVSESNWNSLPDSSKTELDMPI---LMEDEFFEWATNTE 659

  Fly   555 LKK------LQQLKDETGELSS----------ADEKR-YRN-LKRAAENQ-----------LLEA 590
            ::|      .:::|....|.|:          .:.|| |.| ||...|::           .|.|
 Worm   660 IQKENGENLTREMKKAIVEQSTQKYHCKGILVGEAKRIYENILKNQREHKPSQAILKEAFFALYA 724

  Fly   591 ADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLI------------LVGD 643
            .|:|..|.     ..:..:...::|.|.|....:....||    ...||            ||||
 Worm   725 PDIIVSTA-----DSIHNLLENNVLRDVSNIQFDEASQVP----EHTLISLLHKFPNASFGLVGD 780

  Fly   644 HCQLGPVVMC--------------KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPS 694
            ..||  ...|              |..|||. ...:|.:.:        |.:.||.||..::..|
 Worm   781 INQL--PAYCDDDLQGLLKDYGIGKTMARAS-RDKMFPQSI--------LRLVYRCHPTTTKILS 834

  Fly   695 NFFYEGSLQNGVCAEDR----RLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEK 755
            :.||.|.|.:||....|    |::.|. ||....|:  ||...:::....|||..|.:|...|.:
 Worm   835 DLFYNGQLISGVEKNQRDEFMRMRPDI-WPNSSFPI--LVLNHEKDGYRMGTSVANNSEKDQVVR 896

  Fly   756 ITTRFLKA----GIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDI 816
            |.:...|.    |:....||||:.|:.|.:.|...::         ..:::..::|||||.|:::
 Worm   897 IVSLLTKKVKGYGLSESDIGIISFYKAQTSLLADALK---------KTDVKCGTIDAFQGTEREV 952

  Fly   817 IIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE- 880
            :|:.|...|...   |:.:..|:|||::||:...||:||...|.|.:.|:.:....:..|..:| 
 Worm   953 MIVCCTNKNPSL---FMQEGTRVNVAMSRARQATIIIGNIAKLKKAKHWDTIAQSAQINKCSMEV 1014

  Fly   881 ---GSLNNLKESLIHF----QKPKKLVNSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQ 938
               |.....:..::..    :|..|:..:.|.|.|...:.....||.....| ..:.....:.|.
 Worm  1015 STFGGSEQKQPQMVQIKCTAKKSNKIQKNQNEGKHISISQTVKTKEDTEQSS-KPQQRRRRRNRN 1078

  Fly   939 MVGQSMNGGQ 948
            .:||:...|:
 Worm  1079 NIGQNSTNGR 1088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500
DNA2 122..897 CDD:224037 147/607 (24%)
Mis12 210..299 CDD:283509
AAA_19 458..>515 CDD:289986 19/66 (29%)
AAA_12 661..857 CDD:289832 57/203 (28%)
C44H9.4NP_506213.2 AAA_11 539..786 CDD:289831 60/260 (23%)
UvrD_C_2 823..988 CDD:304668 53/179 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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