DRSC/TRiP Functional Genomics Resources

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Protein Alignment Upf1 and eri-7

DIOPT Version :9

Sequence 1:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster
Sequence 2:NP_491374.2 Gene:eri-7 / 172047 WormBaseID:WBGene00016566 Length:625 Species:Caenorhabditis elegans


Alignment Length:519 Identity:143/519 - (27%)
Similarity:251/519 - (48%) Gaps:81/519 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 LPDLNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQL 511
            :|..|..|..|:|.||  .|.|..||||||||||.|...::.:|:: ....|:|.||:..|:..:
 Worm    63 IPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQ-QKKQVVVLAPTREALANI 126

  Fly   512 TEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSE--LKKLQQLKD-----ETGELS 569
            .....:| ||.:.:.......:|:        |:.|::...|:  |...::::|     :.||::
 Worm   127 RMMTKKT-LKRMGIKVHEHALMDT--------NEYRDVINKSDRALMAAEEVRDLRKAFDNGEIT 182

  Fly   570 S--ADEKRYRNLKRAAENQLLEAADVI-----CCTCVGAG--DGRLSRVKFTSIL--IDESMQST 623
            .  .||.|...:.| ..|::  .|:||     ....:||.  |..:...||...|  |||:.|..
 Worm   183 ENVLDEMRQSIINR-VRNEV--GAEVIGNVRVAFATIGASFVDFVMKHKKFDPCLCIIDEAAQVM 244

  Fly   624 EPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 686
            |.:.. |.|...|::::.||..||..:|...:|...||..|:.:|::..  ......||.|||.:
 Worm   245 EAQTW-PAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEKKNNFSWIMLENQYRSN 308

  Fly   687 PELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPER------PMFFLVTQGQEEI-------- 737
            .:::.:.:..||...|:..|...:..|..... |||::      |:..:.|..:.::        
 Worm   309 AKIATWSNTCFYHNQLKTDVKCHEYSLHTILN-PQPKKFRNLFDPLVLIDTSLERDVEKRLETYE 372

  Fly   738 -AGSGTSFLNRTEA----ANV--EKIT----TRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQG 791
             |...|:.:|:|:.    ||:  .||.    .|.||.|::|..|.|||||:||.:.:.:.|:..|
 Worm   373 HAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLKYGVQPSDIAIITPYKGQTSLVTKLMEEFG 437

  Fly   792 SLHSRL-YQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGN 855
            :..... :.:..|.:||:.||:|.:::|.:.||||.|:.:||:::.|||||.:||||...:.:||
 Worm   438 AETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNVVITRAKRHFMFIGN 502

  Fly   856 PKVLAK------QQLWNHLLN----FYKDRKVLVEGSL-----NNL---KESLIHFQKPKKLVN 901
            ..:||:      ::|::...|    |:.:.....:|::     ||.   .||.:::...::::|
 Worm   503 GYLLAESKKDEIRKLYDCFKNAKRRFHPNNAFGEDGNVTDYVSNNFGQDLESFMNYSNDEEMIN 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500
DNA2 122..897 CDD:224037 142/513 (28%)
Mis12 210..299 CDD:283509
AAA_19 458..>515 CDD:289986 23/58 (40%)
AAA_12 661..857 CDD:289832 66/223 (30%)
eri-7NP_491374.2 AAA_11 67..273 CDD:289831 63/219 (29%)
AAA_19 77..131 CDD:289986 21/54 (39%)
AAA_12 284..502 CDD:289832 63/218 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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