Sequence 1: | NP_001285145.1 | Gene: | Upf1 / 32153 | FlyBaseID: | FBgn0030354 | Length: | 1180 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002936221.1 | Gene: | setx / 100145435 | XenbaseID: | XB-GENE-966858 | Length: | 2535 | Species: | Xenopus tropicalis |
Alignment Length: | 1148 | Identity: | 281/1148 - (24%) |
---|---|---|---|
Similarity: | 444/1148 - (38%) | Gaps: | 357/1148 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 TYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQNDQLEIAQRCSAGDSH--PR 67
Fly 68 LASITNDLA------------------DLQFEEED----------------DEPGSSYVK----- 93
Fly 94 --ELPPHA------CKYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGE 150
Fly 151 GPLGETILECYSCGVRNVFV--------------------LGFIPAKADSVVVLLCR--QPCAAQ 193
Fly 194 NSLKDMNWDQEQWKPLIADRCFLAWLVKQP-----SEQGQLRARQISAAQ--INKLEELW--KEN 249
Fly 250 IEATFQDLEKPGIDSEPAH--------VLLRYEDGYQYEKTFGPLVRLEAEYDQKLKESATQENI 306
Fly 307 EVRWDVGLNKKTIAYFTLAK---------------------TDSDMKL----------------- 333
Fly 334 ---MHGDEL-----RLHYVGELYNPWSEIGHVIKVPDNFGDDVGL---------ELKSSTNAPVK 381
Fly 382 CTSNFTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRG---PQPKL 443
Fly 444 F-----------SAPHLPDLNRSQVYAVKHAL----QRP----LSLIQGPPGTGKTVTSATIVYQ 489
Fly 490 LVKLHGGT---------------VLVCAPSNTAVDQLTEKI--------HRTN--------LKVV 523
Fly 524 RVCAKSREAIDSPVSFLAL----HNQIRNMETNSELKKLQQLKD-ETGELS--SADEKRYRN--- 578
Fly 579 ------LKRAAENQLLEAAD---------------------VICCTCVGAGD-------GRLSRV 609
Fly 610 KFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL-- 672
Fly 673 --GIRP--FRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQG 733
Fly 734 QEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ-------IGIITPYEGQRAYLVQYMQYQG 791
Fly 792 SLHSRLYQEI---EIASVDAFQGREKDIIIMSCVRSNERQ-GIGFLNDPRRLNVALTRAKFGIII 852
Fly 853 VGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQK 895 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Upf1 | NP_001285145.1 | UPF1_Zn_bind | 98..249 | CDD:286500 | 35/187 (19%) |
DNA2 | 122..897 | CDD:224037 | 252/982 (26%) | ||
Mis12 | 210..299 | CDD:283509 | 20/105 (19%) | ||
AAA_19 | 458..>515 | CDD:289986 | 28/79 (35%) | ||
AAA_12 | 661..857 | CDD:289832 | 79/212 (37%) | ||
setx | XP_002936221.1 | DEXXQc_SETX | 1840..2157 | CDD:350800 | 95/320 (30%) |
AAA_12 | 2128..2323 | CDD:404073 | 78/210 (37%) | ||
PHA03247 | <2365..2534 | CDD:223021 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D62494at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000219 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |