DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-1 and tmed5

DIOPT Version :10

Sequence 1:NP_572754.1 Gene:p24-1 / 32140 FlyBaseID:FBgn0030341 Length:210 Species:Drosophila melanogaster
Sequence 2:XP_031755940.1 Gene:tmed5 / 549314 XenbaseID:XB-GENE-951292 Length:223 Species:Xenopus tropicalis


Alignment Length:232 Identity:62/232 - (26%)
Similarity:106/232 - (45%) Gaps:38/232 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNTQIVVFAVALMM------HCIS-----AVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGG 54
            |..:.|:|   ||:      ||:.     ..::||.|.....:||::.:|::::...|:||..|.
 Frog     1 MGKEAVLF---LMLTHYTVRHCMGFSQSVDSDYTFTLPAGQKECFFQPMKRDATLEIEYQVLDGA 62

  Fly    55 QLDVDVTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFSAFSHKIVYVDFQVGEEPAL 119
            .||||.:|..|.|:::.|.|:.:...|. |....|.|..||.|.||..|.|:::.      |..|
 Frog    63 GLDVDFSLTSPNGELLLSEERQSDGVHS-VETIDGDYQFCFDNSFSRMSEKVIFF------ELIL 120

  Fly   120 PGVDEHATVLTQME---TSSQAIHKGLNDILDA--------------QTHHRLREAQGRKRAEDL 167
            ..:::....|...:   |.:..:...|.|||:.              ||..:..||:.|...|..
 Frog   121 DHLNDEGNELEDWKSYITGTDLLDMKLEDILETINSVKGRLTKSAQIQTLLKAFEARDRNLQESN 185

  Fly   168 NQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDRKPSQ 204
            .:||..||......::|:..:|:.:||:.|.|::.|:
 Frog   186 FERVTFWSVFNLTVMVVVSALQVYMLRSLFEDKRKSR 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-1NP_572754.1 EMP24_GP25L 21..197 CDD:426051 52/192 (27%)
tmed5XP_031755940.1 EMP24_GP25L 29..216 CDD:426051 52/193 (27%)

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