DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-1 and Tmed5

DIOPT Version :10

Sequence 1:NP_572754.1 Gene:p24-1 / 32140 FlyBaseID:FBgn0030341 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001007620.1 Gene:Tmed5 / 289883 RGDID:1359437 Length:229 Species:Rattus norvegicus


Alignment Length:201 Identity:57/201 - (28%)
Similarity:95/201 - (47%) Gaps:24/201 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQFVA 85
            :|||.|.....:|||:.:...:|...|:||..||:||:|..|..|:|:.:. .|:...|....|.
  Rat    35 DFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGGELDIDFHLASPEGRTLV-FEQRKSDGVHTVE 98

  Fly    86 ETTGVYTACFGNQFSAFSHKIVYVDF---QVGEEPALPGVDEHATVLTQMETSSQAIHKGLNDIL 147
            ...|.|..||.|.||..|.|:::.:.   .:|||  :.|.::....:    |::..:...|.|||
  Rat    99 TEDGDYMFCFDNTFSTISEKVIFFELILDNMGEE--VEGQEDWKKYI----TNTDVLEMKLEDIL 157

  Fly   148 DA--------------QTHHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFT 198
            ::              ||..|..||:.|...|....||..||.:....::|:..:|:..|::.|.
  Rat   158 ESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVVVSAIQVYTLKSLFE 222

  Fly   199 DRKPSQ 204
            |::.|:
  Rat   223 DKRKSR 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-1NP_572754.1 EMP24_GP25L 21..197 CDD:426051 54/192 (28%)
Tmed5NP_001007620.1 EMP24_GP25L 35..222 CDD:426051 54/193 (28%)

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