DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-1 and tmed-10

DIOPT Version :10

Sequence 1:NP_572754.1 Gene:p24-1 / 32140 FlyBaseID:FBgn0030341 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_505879.1 Gene:tmed-10 / 179567 WormBaseID:WBGene00009829 Length:204 Species:Caenorhabditis elegans


Alignment Length:214 Identity:50/214 - (23%)
Similarity:85/214 - (39%) Gaps:33/214 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVDVTLKDPQGKV 69
            :|:|..|:::    |....|.:......|..|||.||.....|::.|.|.|....:.:.|.:|..
 Worm     4 LVIFLSAIVL----AHSLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQGIQYTGSIHVTDTRGHT 64

  Fly    70 IYSLE-----KATFDSHQFVAETTGVYTACFGNQFSAFSHKIVYVDFQVGEEPALPGVDEHATVL 129
            :|..|     |..|   .|.|:...::..|..|...| .|.        ||:..:..:.:|....
 Worm    65 LYKRENFADLKGKF---AFTADEYDIFEICIENHPPA-GHP--------GEKREVSLILKHGVEA 117

  Fly   130 TQMETSSQAIH--------KGLNDILDAQTHH----RLREAQGRKRAEDLNQRVMVWSSLETAAV 182
            ...:..::|..        :.|.|:.|:.|..    |.||.:.|...|..|.||:..|......:
 Worm   118 KNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLCL 182

  Fly   183 IVIGLVQIMVLRNFFTDRK 201
            :.:.:.|::.|||:|..:|
 Worm   183 LGLAIWQVLFLRNYFKSKK 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-1NP_572754.1 EMP24_GP25L 21..197 CDD:426051 44/192 (23%)
tmed-10NP_505879.1 EMP24_GP25L 16..198 CDD:426051 44/193 (23%)

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