DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment p24-1 and sel-9

DIOPT Version :9

Sequence 1:NP_001259465.1 Gene:p24-1 / 32140 FlyBaseID:FBgn0030341 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001370673.1 Gene:sel-9 / 179213 WormBaseID:WBGene00004766 Length:203 Species:Caenorhabditis elegans


Alignment Length:205 Identity:58/205 - (28%)
Similarity:96/205 - (46%) Gaps:10/205 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNTQIVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVDVTLKDP 65
            ||:...:.||   :....|..:...:..|...||::.:...:.....|:|:.||.||:||.:..|
 Worm     1 MNSLTWILAV---LFVTPAASYFIHVDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGP 62

  Fly    66 QGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFSAFSHKIVYVDFQVGE-EPALPG--VDEHAT 127
            ..|.||..|:.:.....|.|...||||.||||:.|..:.|.|....::.| ....||  .::.|.
 Worm    63 DNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAA 127

  Fly   128 VLTQMETSSQAIHKGLNDILDAQTHHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLV--QI 190
            ...::|...:.:...|..:...|.:..:||...|...|:.|.||::|::.|  |.:::|:.  ||
 Worm   128 DNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFE--AFVLVGMTVGQI 190

  Fly   191 MVLRNFFTDR 200
            ..|:.||..|
 Worm   191 FYLKRFFEVR 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-1NP_001259465.1 EMP24_GP25L 21..197 CDD:279450 50/180 (28%)
sel-9NP_001370673.1 EMP24_GP25L 21..198 CDD:395878 51/178 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000272
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.