DRSC/TRiP Functional Genomics Resources

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Protein Alignment p24-1 and tmed-3

DIOPT Version :9

Sequence 1:NP_001259465.1 Gene:p24-1 / 32140 FlyBaseID:FBgn0030341 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_491892.1 Gene:tmed-3 / 172372 WormBaseID:WBGene00019003 Length:203 Species:Caenorhabditis elegans


Alignment Length:184 Identity:96/184 - (52%)
Similarity:129/184 - (70%) Gaps:1/184 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 AVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQF 83
            ::|.||:|.|||..||||::||:....|||||..||..|||:.::||.|||:|...|..:||..|
 Worm    17 SIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNGKVLYKDTKKQYDSINF 81

  Fly    84 VAETTGVYTACFGNQFSAFSHKIVYVDFQVGEEPAL-PGVDEHATVLTQMETSSQAIHKGLNDIL 147
            .||..|.|.|||.|:||.|||||||:|:|.|::.|| ..|.:.|..:||:|..:.||...|..|.
 Worm    82 KAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGAHAMTQLENYAVAIGDKLRTID 146

  Fly   148 DAQTHHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDRK 201
            |.|||||||||.||||||:||:|||:||..::|.|:.||:.|:.:|::||.|::
 Worm   147 DYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVVFIGIGQVFLLKSFFNDKR 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p24-1NP_001259465.1 EMP24_GP25L 21..197 CDD:279450 93/176 (53%)
tmed-3NP_491892.1 EMP24_GP25L 19..197 CDD:366467 94/177 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161747
Domainoid 1 1.000 190 1.000 Domainoid score I1926
eggNOG 1 0.900 - - E1_KOG1693
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H45644
Inparanoid 1 1.050 197 1.000 Inparanoid score I2506
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52485
OrthoDB 1 1.010 - - D528360at33208
OrthoFinder 1 1.000 - - FOG0000272
OrthoInspector 1 1.000 - - oto18789
orthoMCL 1 0.900 - - OOG6_103696
Panther 1 1.100 - - LDO PTHR22811
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1790
SonicParanoid 1 1.000 - - X1789
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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